Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020409_P002 | Maize | nucleus | 78.19 | 77.24 |
| TraesCS5A01G204900.1 | Wheat | nucleus | 55.15 | 55.01 |
| TraesCS5B01G203400.2 | Wheat | nucleus | 55.39 | 54.33 |
| TraesCS5D01G211200.2 | Wheat | nucleus | 54.9 | 53.59 |
| HORVU5Hr1G060730.3 | Barley | plastid | 53.19 | 50.58 |
| EES15016 | Sorghum | cytosol | 42.89 | 40.89 |
| Solyc03g118540.2.1 | Tomato | cytosol | 24.51 | 30.67 |
| GSMUA_Achr9P15630_001 | Banana | cytosol | 30.64 | 30.49 |
| GSMUA_Achr7P12530_001 | Banana | nucleus | 30.15 | 30.0 |
| PGSC0003DMT400074101 | Potato | nucleus | 17.89 | 28.85 |
| AT1G48500.1 | Thale cress | nucleus | 21.81 | 28.71 |
| PGSC0003DMT400036790 | Potato | cytosol | 26.96 | 28.21 |
| GSMUA_Achr5P05900_001 | Banana | nucleus | 28.19 | 27.71 |
| VIT_01s0011g05560.t01 | Wine grape | cytosol | 25.98 | 27.6 |
| Solyc06g068930.1.1 | Tomato | nucleus | 16.42 | 27.24 |
| KRH38274 | Soybean | cytosol | 21.08 | 26.96 |
| Solyc01g005440.2.1 | Tomato | cytosol | 20.1 | 26.54 |
| CDX95570 | Canola | plastid | 9.56 | 26.0 |
| Bra003947.1-P | Field mustard | cytosol, mitochondrion, plastid | 13.97 | 25.91 |
| Bra007937.1-P | Field mustard | nucleus | 15.69 | 25.6 |
| PGSC0003DMT400081778 | Potato | cytosol | 20.83 | 25.15 |
| Bra022254.1-P | Field mustard | nucleus | 20.59 | 25.07 |
| KRH41663 | Soybean | cytosol | 22.55 | 24.93 |
| KRH60357 | Soybean | nucleus | 22.55 | 24.8 |
| Bra016193.1-P | Field mustard | nucleus | 14.71 | 24.1 |
| AT3G17860.1 | Thale cress | nucleus | 20.59 | 23.86 |
| Bra021281.1-P | Field mustard | nucleus | 20.59 | 23.8 |
| VIT_17s0000g02230.t01 | Wine grape | nucleus | 22.3 | 22.98 |
| AT1G70700.3 | Thale cress | cytosol | 15.44 | 22.83 |
| KRH39044 | Soybean | nucleus | 20.34 | 21.5 |
Protein Annotations
| MapMan:35.1 | EntrezGene:8055801 | UniProt:C5XC57 | InterPro:CCT_CS | EnsemblPlants:EER98873 | ProteinID:EER98873 |
| ProteinID:EER98873.1 | GO:GO:0003674 | GO:GO:0003714 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009611 | GO:GO:0009719 | GO:GO:0009987 | GO:GO:0031347 |
| GO:GO:1903507 | GO:GO:2000022 | InterPro:IPR010399 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 |
| PANTHER:PTHR33077 | PANTHER:PTHR33077:SF3 | SMART:SM00979 | EnsemblPlantsGene:SORBI_3002G196200 | unigene:Sbi.4382 | InterPro:Tify_dom |
| UniParc:UPI0001A83F5F | RefSeq:XP_002462352.1 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr2:-:58508296..58511272
Molecular Weight (calculated)
42810.4 Da
IEP (calculated)
10.437
GRAVY (calculated)
-0.338
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MERDFLAAIG KEHPHPHKEK AAGAAEDSAY FGGARAGAAA AAAPAMDWSF ASKPGAAPAL MSFRSAAREE PSFPQFSSSF DGAKNPAASR ILTHQRSFGP
101: DSTQYAAVHR AQQPPPQHAL NGARVIPVSS PFNHNNNPMF RVQSSPSLPN GTAFKQPPFA INNAVPSSTV GFYGTRDAVR PKTAQLTIFY AGSVNVFDNV
201: SAEKAQELMF LASRGSLPTS APVARKPEAP IFAPAKVAVP EVLPAKQMLF QRPQHVSSPP SAISKPIPGI LQAATLPRSA SSSNLDSPGP KSSVPLAVPP
301: VSQAPAAQPA TLATTTAAAI MPRAVPQARK ASLARFLEKR KERVTTAAPY PSAKSPLESS DTYGSGSAND KSSCTDIALS SNHEESLCLG QPRNISFSQE
401: SPSTKLQM
101: DSTQYAAVHR AQQPPPQHAL NGARVIPVSS PFNHNNNPMF RVQSSPSLPN GTAFKQPPFA INNAVPSSTV GFYGTRDAVR PKTAQLTIFY AGSVNVFDNV
201: SAEKAQELMF LASRGSLPTS APVARKPEAP IFAPAKVAVP EVLPAKQMLF QRPQHVSSPP SAISKPIPGI LQAATLPRSA SSSNLDSPGP KSSVPLAVPP
301: VSQAPAAQPA TLATTTAAAI MPRAVPQARK ASLARFLEKR KERVTTAAPY PSAKSPLESS DTYGSGSAND KSSCTDIALS SNHEESLCLG QPRNISFSQE
401: SPSTKLQM
001: MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
101: PNSNQHEETN AVSMSMPGFQ SHHYAPGGRS FMNNNNNSQP LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA
201: IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG ATKATRGLTS TYHNNQANGS NINCPVPVSC STNVMAPTVA
301: LPLARKASLA RFLEKRKERV TSVSPYCLDK KSSTDCRRSM SECISSSLSS AT
Arabidopsis Description
TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.