Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G211200.2 | Wheat | nucleus | 79.72 | 81.82 |
| TraesCS5B01G203400.2 | Wheat | nucleus | 79.25 | 81.73 |
| TraesCS5A01G204900.1 | Wheat | nucleus | 77.86 | 81.66 |
| EER98873 | Sorghum | nucleus | 50.58 | 53.19 |
| Zm00001d020409_P002 | Maize | nucleus | 47.55 | 49.39 |
| GSMUA_Achr9P15630_001 | Banana | cytosol | 27.74 | 29.02 |
| Solyc03g118540.2.1 | Tomato | cytosol | 20.51 | 26.99 |
| GSMUA_Achr5P05900_001 | Banana | nucleus | 26.11 | 26.99 |
| GSMUA_Achr7P12530_001 | Banana | nucleus | 25.64 | 26.83 |
| Solyc01g005440.2.1 | Tomato | cytosol | 19.11 | 26.54 |
| KRH38274 | Soybean | cytosol | 19.35 | 26.02 |
| VIT_01s0011g05560.t01 | Wine grape | cytosol | 23.08 | 25.78 |
| Solyc06g068930.1.1 | Tomato | nucleus | 14.69 | 25.61 |
| PGSC0003DMT400036790 | Potato | cytosol | 23.08 | 25.38 |
| PGSC0003DMT400074101 | Potato | nucleus | 14.92 | 25.3 |
| PGSC0003DMT400081778 | Potato | cytosol | 19.35 | 24.56 |
| HORVU4Hr1G087520.3 | Barley | plastid | 19.58 | 24.28 |
| KRH60357 | Soybean | nucleus | 20.98 | 24.26 |
| AT1G48500.1 | Thale cress | nucleus | 17.48 | 24.19 |
| Zm00001d005726_P001 | Maize | endoplasmic reticulum, peroxisome, plasma membrane | 30.3 | 24.12 |
| CDX95570 | Canola | plastid | 8.39 | 24.0 |
| KRH41663 | Soybean | cytosol | 20.51 | 23.85 |
| Bra003947.1-P | Field mustard | cytosol, mitochondrion, plastid | 12.12 | 23.64 |
| Bra022254.1-P | Field mustard | nucleus | 18.41 | 23.58 |
| VIT_17s0000g02230.t01 | Wine grape | nucleus | 21.45 | 23.23 |
| Bra007937.1-P | Field mustard | nucleus | 13.29 | 22.8 |
| Bra021281.1-P | Field mustard | nucleus | 18.65 | 22.66 |
| Bra016193.1-P | Field mustard | nucleus | 12.82 | 22.09 |
| AT3G17860.1 | Thale cress | nucleus | 17.48 | 21.31 |
| KRH39044 | Soybean | nucleus | 18.41 | 20.47 |
| AT1G70700.3 | Thale cress | cytosol | 13.05 | 20.29 |
Protein Annotations
Description
No Description!
Coordinates
chrchr5H:+:475428360..475430681
Molecular Weight (calculated)
45007.3 Da
IEP (calculated)
10.491
GRAVY (calculated)
-0.340
Length
429 amino acids
Sequence
(BLAST)
(BLAST)
001: MGMFNGSCAS LACSMRVRPS VRPPICTPSS DPNCELSPFL SVCAAYFGGG GVPPMDWSFA GRAGAAPAVM SFRSAAREEQ QQQQGELAFS KQQASRVLTP
101: QRSFGAENHG SVQYAAAARA AYGGQPPQQQ HAPNGARVIP MSSPFNPNNP MFRVQSSPNL PNGVAAGSPF KQPPFAMNNA VAASTVGVYK SRDMPKPKTA
201: QLTIFYAGSV NVFNNVSAEK AQELMFLASR GSLPAAPSTV TRSPDATFFT PAKLAAPELS PAKQMLPQMP QRVSPPLSGI SKPISMVSQA ACVPKSASSS
301: NIDSTAPKSS GQLVVPPTSQ PSSSTHPVTL ASTTAASIMP RAVPQARKAS LARFLEKRKE RVTTTAPYPS AKSPMESSDT VGSANDNNSK SSSCTEIAFS
401: SNHEESLRLG GRPRNISFSG ESPSTKLHI
101: QRSFGAENHG SVQYAAAARA AYGGQPPQQQ HAPNGARVIP MSSPFNPNNP MFRVQSSPNL PNGVAAGSPF KQPPFAMNNA VAASTVGVYK SRDMPKPKTA
201: QLTIFYAGSV NVFNNVSAEK AQELMFLASR GSLPAAPSTV TRSPDATFFT PAKLAAPELS PAKQMLPQMP QRVSPPLSGI SKPISMVSQA ACVPKSASSS
301: NIDSTAPKSS GQLVVPPTSQ PSSSTHPVTL ASTTAASIMP RAVPQARKAS LARFLEKRKE RVTTTAPYPS AKSPMESSDT VGSANDNNSK SSSCTEIAFS
401: SNHEESLRLG GRPRNISFSG ESPSTKLHI
001: MNWSFSNKVS ASSSQFLSFR PTQEDRHRKS GNYHLPHSGS FMPSSVADVY DSTRKAPYSS VQGVRMFPNS NQHEETNAVS MSMPGFQSHH YAPGGRSFMN
101: NNNNSQPLVG VPIMAPPISI LPPPGSIVGT TDIRSSSKPI GSPAQLTIFY AGSVCVYDDI SPEKAKAIML LAGNGSSMPQ VFSPPQTHQQ VVHHTRASVD
201: SSAMPPSFMP TISYLSPEAG SSTNGLGATK ATRGLTSTYH NNQANGSNIN CPVPVSCSTN VMAPTVALPL ARKASLARFL EKRKERVTSV SPYCLDKKSS
301: TDCRRSMSEC ISSSLSSAT
101: NNNNSQPLVG VPIMAPPISI LPPPGSIVGT TDIRSSSKPI GSPAQLTIFY AGSVCVYDDI SPEKAKAIML LAGNGSSMPQ VFSPPQTHQQ VVHHTRASVD
201: SSAMPPSFMP TISYLSPEAG SSTNGLGATK ATRGLTSTYH NNQANGSNIN CPVPVSCSTN VMAPTVALPL ARKASLARFL EKRKERVTSV SPYCLDKKSS
301: TDCRRSMSEC ISSSLSSAT
Arabidopsis Description
TIFY6BProtein TIFY 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9LVI4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.