Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G367500.1 | Wheat | cytosol | 92.77 | 99.1 |
| TraesCS3B01G399200.1 | Wheat | cytosol | 98.82 | 98.99 |
| HORVU3Hr1G085210.2 | Barley | cytosol | 96.81 | 96.97 |
| Os01t0853400-01 | Rice | cytosol | 88.07 | 88.07 |
| Zm00001d012338_P001 | Maize | cytosol | 84.71 | 84.56 |
| Zm00001d042833_P001 | Maize | cytosol | 84.03 | 83.61 |
| EES01769 | Sorghum | cytosol | 83.7 | 83.56 |
| TraesCS1D01G278400.1 | Wheat | cytosol | 79.16 | 79.56 |
| GSMUA_Achr6P33630_001 | Banana | cytosol, mitochondrion, nucleus | 66.72 | 68.1 |
| GSMUA_Achr5P28930_001 | Banana | cytosol | 63.53 | 67.5 |
| GSMUA_Achr9P03690_001 | Banana | cytosol | 66.22 | 65.34 |
| TraesCS4D01G214200.1 | Wheat | cytosol | 61.34 | 62.29 |
| VIT_13s0019g03380.t01 | Wine grape | cytosol | 60.84 | 60.54 |
| KRG97777 | Soybean | cytosol | 58.49 | 58.98 |
| KRH31107 | Soybean | cytosol | 58.49 | 58.98 |
| KRH14993 | Soybean | cytosol | 55.13 | 57.75 |
| KRH73146 | Soybean | cytosol | 56.3 | 57.36 |
| Solyc05g052620.2.1 | Tomato | cytosol | 57.98 | 57.21 |
| CDY24941 | Canola | cytosol | 55.8 | 56.27 |
| Bra000156.1-P | Field mustard | cytosol | 55.63 | 56.1 |
| AT2G39940.1 | Thale cress | cytosol | 55.46 | 55.74 |
| GSMUA_Achr8P02350_001 | Banana | cytosol | 15.8 | 54.65 |
| CDY20501 | Canola | cytosol | 54.96 | 54.32 |
| Bra005000.1-P | Field mustard | cytosol | 54.79 | 54.06 |
| CDX93223 | Canola | cytosol | 53.61 | 53.98 |
| CDX74819 | Canola | cytosol | 54.29 | 53.83 |
| CDX93225 | Canola | cytosol | 53.28 | 53.37 |
| CDY07041 | Canola | cytosol | 52.94 | 53.21 |
| CDY07040 | Canola | cytosol | 53.61 | 52.55 |
| Bra017045.1-P | Field mustard | cytosol | 53.28 | 52.22 |
| Bra017044.1-P | Field mustard | cytosol | 52.77 | 51.99 |
| CDY60996 | Canola | endoplasmic reticulum, golgi | 55.46 | 46.94 |
| TraesCS5D01G288000.1 | Wheat | cytosol | 32.44 | 33.92 |
| TraesCS2D01G285000.1 | Wheat | cytosol | 30.42 | 31.53 |
| TraesCS4D01G301800.1 | Wheat | cytosol, nucleus, peroxisome | 32.27 | 31.48 |
| TraesCS7D01G177500.1 | Wheat | cytosol, plastid | 32.44 | 30.68 |
| TraesCS1D01G099900.1 | Wheat | cytosol | 29.41 | 29.17 |
| TraesCS6D01G294600.1 | Wheat | plastid | 30.25 | 27.78 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:11.7.2.1.1 | Gene3D:3.80.10.10 | InterPro:F-box-like_dom_sf | GO:GO:0002213 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009719 | GO:GO:0009987 | GO:GO:2000022 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_Cys-con_subtyp | PANTHER:PTHR43944 | PANTHER:PTHR43944:SF3 | SMART:SM00367 | SUPFAM:SSF52047 |
| SUPFAM:SSF81383 | EnsemblPlantsGene:TraesCS3D01G360400 | EnsemblPlants:TraesCS3D01G360400.2 | : | : | : |
Description
No Description!
Coordinates
chr3D:+:474118142..474121292
Molecular Weight (calculated)
66397.7 Da
IEP (calculated)
7.136
GRAVY (calculated)
-0.008
Length
595 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGEVPEPRR LSRALSFGCV PDEALHLVMG YVDAPRDREA ASLVCRRWHR IDALTRKHVT VAFCYAADPA RLLARFPRLE SLALKGRPRA AMYGLISDDW
101: GAYAAPWVAR LAAPLECLKA LHLRRMTVTD DDVATLIRSR GHMLQELKLD KCSGFSTDAL RLVARSCRSL RTLFLEECVI TGEGGEWLHE LAVNNSVLVT
201: LNFYMTELKV VPADLELLAK NCKSLLSLKI SECDLSDLIG FFEAANALQD FAGGSFNEVG ELTKYEKVKF PPRICFLGLT FMGKNEMPVI FPFSASLKKL
301: DLQYTFLTTE DHCQLISKCP NLFVLEVRNV IGDRGLEVVG DTCKKLRRLR IERGDDDPGL QEEQGGVSQL GLTAVAVGCR DLEYIAAYVS DITNGALESI
401: GTFCKNLYDF RLVLLDRQKQ VTDLPLDNGV RALLRSCTKL RRFALYLRPG GLSDTGLDYI GQYSGNIQYM LLGNVGESDH GLIRFAIGCT NLRKLELRSC
501: CFSEQALSLA VLHMPSLRYI WVQGYKASPA GLELLLMARR FWNIEFTPPS PEGLFRMTLE GEPCVDKQAQ VLAYYSLAGQ RQDCPDWVTP LHPAA
101: GAYAAPWVAR LAAPLECLKA LHLRRMTVTD DDVATLIRSR GHMLQELKLD KCSGFSTDAL RLVARSCRSL RTLFLEECVI TGEGGEWLHE LAVNNSVLVT
201: LNFYMTELKV VPADLELLAK NCKSLLSLKI SECDLSDLIG FFEAANALQD FAGGSFNEVG ELTKYEKVKF PPRICFLGLT FMGKNEMPVI FPFSASLKKL
301: DLQYTFLTTE DHCQLISKCP NLFVLEVRNV IGDRGLEVVG DTCKKLRRLR IERGDDDPGL QEEQGGVSQL GLTAVAVGCR DLEYIAAYVS DITNGALESI
401: GTFCKNLYDF RLVLLDRQKQ VTDLPLDNGV RALLRSCTKL RRFALYLRPG GLSDTGLDYI GQYSGNIQYM LLGNVGESDH GLIRFAIGCT NLRKLELRSC
501: CFSEQALSLA VLHMPSLRYI WVQGYKASPA GLELLLMARR FWNIEFTPPS PEGLFRMTLE GEPCVDKQAQ VLAYYSLAGQ RQDCPDWVTP LHPAA
001: MEDPDIKRCK LSCVATVDDV IEQVMTYITD PKDRDSASLV CRRWFKIDSE TREHVTMALC YTATPDRLSR RFPNLRSLKL KGKPRAAMFN LIPENWGGYV
101: TPWVTEISNN LRQLKSVHFR RMIVSDLDLD RLAKARADDL ETLKLDKCSG FTTDGLLSIV THCRKIKTLL MEESSFSEKD GKWLHELAQH NTSLEVLNFY
201: MTEFAKISPK DLETIARNCR SLVSVKVGDF EILELVGFFK AAANLEEFCG GSLNEDIGMP EKYMNLVFPR KLCRLGLSYM GPNEMPILFP FAAQIRKLDL
301: LYALLETEDH CTLIQKCPNL EVLETRNVIG DRGLEVLAQY CKQLKRLRIE RGADEQGMED EEGLVSQRGL IALAQGCQEL EYMAVYVSDI TNESLESIGT
401: YLKNLCDFRL VLLDREERIT DLPLDNGVRS LLIGCKKLRR FAFYLRQGGL TDLGLSYIGQ YSPNVRWMLL GYVGESDEGL MEFSRGCPNL QKLEMRGCCF
501: SERAIAAAVT KLPSLRYLWV QGYRASMTGQ DLMQMARPYW NIELIPSRRV PEVNQQGEIR EMEHPAHILA YYSLAGQRTD CPTTVRVLKE PI
101: TPWVTEISNN LRQLKSVHFR RMIVSDLDLD RLAKARADDL ETLKLDKCSG FTTDGLLSIV THCRKIKTLL MEESSFSEKD GKWLHELAQH NTSLEVLNFY
201: MTEFAKISPK DLETIARNCR SLVSVKVGDF EILELVGFFK AAANLEEFCG GSLNEDIGMP EKYMNLVFPR KLCRLGLSYM GPNEMPILFP FAAQIRKLDL
301: LYALLETEDH CTLIQKCPNL EVLETRNVIG DRGLEVLAQY CKQLKRLRIE RGADEQGMED EEGLVSQRGL IALAQGCQEL EYMAVYVSDI TNESLESIGT
401: YLKNLCDFRL VLLDREERIT DLPLDNGVRS LLIGCKKLRR FAFYLRQGGL TDLGLSYIGQ YSPNVRWMLL GYVGESDEGL MEFSRGCPNL QKLEMRGCCF
501: SERAIAAAVT KLPSLRYLWV QGYRASMTGQ DLMQMARPYW NIELIPSRRV PEVNQQGEIR EMEHPAHILA YYSLAGQRTD CPTTVRVLKE PI
Arabidopsis Description
COI1Coronatine-insensitive protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04197]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.