Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G001800.1 | Wheat | cytosol | 98.03 | 98.36 |
| Os03t0187500-01 | Rice | cytosol | 36.72 | 88.89 |
| HORVU4Hr1G078120.4 | Barley | cytosol, plastid | 96.39 | 86.22 |
| EER92735 | Sorghum | cytosol | 79.02 | 80.07 |
| Zm00001d027975_P001 | Maize | cytosol | 78.2 | 79.77 |
| Zm00001d048233_P001 | Maize | cytosol | 77.54 | 79.1 |
| VIT_18s0001g07120.t01 | Wine grape | cytosol | 58.2 | 59.76 |
| GSMUA_Achr7P11780_001 | Banana | cytosol | 56.07 | 57.97 |
| PGSC0003DMT400005419 | Potato | cytosol | 57.7 | 57.42 |
| CDY21439 | Canola | cytosol | 56.56 | 57.12 |
| KRH62206 | Soybean | cytosol | 54.59 | 57.12 |
| KRH52925 | Soybean | cytosol | 54.92 | 57.07 |
| Bra000604.1-P | Field mustard | cytosol, plastid | 56.39 | 56.67 |
| Solyc04g074980.2.1 | Tomato | cytosol | 57.87 | 56.66 |
| CDX83172 | Canola | cytosol, plastid | 56.07 | 56.34 |
| KRH72427 | Soybean | cytosol | 57.87 | 56.03 |
| AT5G49980.1 | Thale cress | nucleus | 56.23 | 55.41 |
| TraesCS7D01G177500.1 | Wheat | cytosol, plastid | 56.89 | 55.17 |
| CDY03450 | Canola | cytosol | 54.92 | 54.92 |
| Bra013798.1-P | Field mustard | cytosol | 54.43 | 54.7 |
| CDY34286 | Canola | cytosol | 54.59 | 54.68 |
| KRH16819 | Soybean | cytosol | 56.89 | 54.22 |
| AT4G24390.1 | Thale cress | cytosol, plastid | 54.92 | 53.77 |
| TraesCS6D01G294600.1 | Wheat | plastid | 57.05 | 53.7 |
| TraesCS5D01G288000.1 | Wheat | cytosol | 43.11 | 46.22 |
| TraesCS2D01G285000.1 | Wheat | cytosol | 42.95 | 45.64 |
| TraesCS1D01G099900.1 | Wheat | cytosol | 42.46 | 43.17 |
| TraesCS3D01G360400.2 | Wheat | cytosol | 31.48 | 32.27 |
| TraesCS4D01G214200.1 | Wheat | cytosol | 29.67 | 30.89 |
| TraesCS1D01G278400.1 | Wheat | cytosol | 29.84 | 30.74 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G301800.1 | EnsemblPlantsGene:TraesCS4D01G301800 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt_Cys-con_subtyp | PANTHER:PTHR43944 | PANTHER:PTHR43944:SF4 | SEG:seg | SMART:SM00367 | SUPFAM:SSF52047 |
| MapMan:11.2.2.1.1 | MapMan:19.2.2.8.1.4.6 | : | : | : | : |
Description
No Description!
Coordinates
chr4D:-:469869813..469871826
Molecular Weight (calculated)
66942.4 Da
IEP (calculated)
6.129
GRAVY (calculated)
-0.073
Length
610 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEEDEDQAG APPKRPRAAS PPPPPPPPPP DQVLDNVLET VLQFLRAPGD RGAASLVCRS WHRAESATRA SVAVRNILAA SPARAARRFP NAHHILLKGR
101: PRFADFNLLP PGWAASAFRP WAAALAAAAF PALRSLSLKR ITVTDDDLDL LARSLPPSFR ELSLLLCDGF SSRGLASLAS HCRGLRVLDV VDCELNEEED
201: DEVSDWVAAF PRGHTDLESL SFECFTPQVP FAALEALVAR SPRLRRLRVN QHVSLGQLRR LMALTPRLTH LGTGSFRPGD GAEDEGLDFG QMLTAFAAAG
301: RANSLVSLSG FRDLAPEYLP TIATVAANLT SMDLSYAPVN PDQVLLFIGQ CRSLETLWVL DSVRDEGLQA VAMCCKKLQV LRVLPLDAHE DADELVSEVG
401: LTAISEGCRD LRSILYFCQR MTNAAVISMS HNCPELKVFR LCIMGRHRPD HVTGEPMDEG FGAIVRNCSK LTRLSTSGHL TDRAFEYIGN YGSSLRTLSV
501: AFAGDSDLAL QHILQGCSKL EKLEIRDCPF GDAGLLSGMH HFYNMRFVWM SGCSLTLQGC QEVARQLPRM VVELINSQPE IEKTDGVDIL YMYRSLEGPR
601: EDVPPFVKIL
101: PRFADFNLLP PGWAASAFRP WAAALAAAAF PALRSLSLKR ITVTDDDLDL LARSLPPSFR ELSLLLCDGF SSRGLASLAS HCRGLRVLDV VDCELNEEED
201: DEVSDWVAAF PRGHTDLESL SFECFTPQVP FAALEALVAR SPRLRRLRVN QHVSLGQLRR LMALTPRLTH LGTGSFRPGD GAEDEGLDFG QMLTAFAAAG
301: RANSLVSLSG FRDLAPEYLP TIATVAANLT SMDLSYAPVN PDQVLLFIGQ CRSLETLWVL DSVRDEGLQA VAMCCKKLQV LRVLPLDAHE DADELVSEVG
401: LTAISEGCRD LRSILYFCQR MTNAAVISMS HNCPELKVFR LCIMGRHRPD HVTGEPMDEG FGAIVRNCSK LTRLSTSGHL TDRAFEYIGN YGSSLRTLSV
501: AFAGDSDLAL QHILQGCSKL EKLEIRDCPF GDAGLLSGMH HFYNMRFVWM SGCSLTLQGC QEVARQLPRM VVELINSQPE IEKTDGVDIL YMYRSLEGPR
601: EDVPPFVKIL
001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
Arabidopsis Description
AFB3Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.