Factsheet for Solyc04g074980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc03g005240.1.1
Solyc06g053930.2.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24390.1	Solyc01g008950.2.1	AT2G41090.1	17360592
AT4G24390.1	Solyc10g077010.1.1	AT2G41090.1	17360592
AT4G24390.1	Solyc10g081170.1.1	AT2G41090.1	17360592
AT4G24390.1	Solyc11g072240.1.1	AT2G41090.1	17360592
AT4G24390.1	Solyc12g099990.1.1	AT2G41090.1	17360592
AT4G24390.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT4G24390.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT4G24390.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT4G24390.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT4G24390.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT4G24390.1	Solyc03g005240.1.1	AT4G14640.1	17360592
AT4G24390.1	Solyc06g053930.2.1	AT4G14640.1	17360592
AT4G24390.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT4G24390.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT4G24390.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT4G24390.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT4G24390.1	Solyc12g099990.1.1	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400005419	Potato	cytosol	95.99	97.55
VIT_18s0001g07120.t01	Wine grape	cytosol	72.07	75.59
Os03t0187500-01	Rice	cytosol	28.41	70.24
KRH62206	Soybean	cytosol	65.49	69.98
KRH72427	Soybean	cytosol	70.31	69.52
AT5G49980.1	Thale cress	nucleus	68.38	68.82
CDY21439	Canola	cytosol	66.61	68.71
Bra000604.1-P	Field mustard	cytosol, plastid	66.93	68.7
KRH52925	Soybean	cytosol	64.69	68.65
CDX83172	Canola	cytosol, plastid	66.77	68.53
KRH16819	Soybean	cytosol	69.5	67.66
Bra013798.1-P	Field mustard	cytosol	64.21	65.9
AT4G24390.1	Thale cress	cytosol, plastid	65.81	65.81
CDY34286	Canola	cytosol	64.04	65.52
CDY03450	Canola	cytosol	63.88	65.25
GSMUA_Achr3P06710_001	Banana	cytosol	57.95	63.0
HORVU4Hr1G080360.1	Barley	cytosol, peroxisome, plastid	34.67	62.97
GSMUA_Achr5P05520_001	Banana	cytosol	58.91	62.52
HORVU4Hr1G015730.1	Barley	cytosol, peroxisome, plastid	33.23	61.98
GSMUA_Achr7P11780_001	Banana	cytosol	58.11	61.36
TraesCS7B01G081200.1	Wheat	cytosol	61.48	61.28
TraesCS7A01G176200.1	Wheat	cytosol	61.16	61.06
TraesCS7D01G177500.1	Wheat	cytosol, plastid	61.64	61.05
Os02t0759700-01	Rice	cytosol	61.64	60.28
HORVU6Hr1G077570.1	Barley	mitochondrion	59.07	58.6
TraesCS6A01G315300.1	Wheat	plastid	60.51	58.27
TraesCS6B01G345800.1	Wheat	plastid	60.19	58.14
TraesCS6D01G294600.1	Wheat	plastid	60.19	57.87
TraesCS4D01G301800.1	Wheat	cytosol, nucleus, peroxisome	56.66	57.87
EES05842	Sorghum	plastid	61.32	57.7
EER92735	Sorghum	cytosol	55.7	57.64
TraesCS4A01G001800.1	Wheat	cytosol	56.18	57.57
Zm00001d052188_P001	Maize	plastid	61.32	57.36
Zm00001d027975_P001	Maize	cytosol	54.9	57.19
Zm00001d048233_P001	Maize	cytosol	54.57	56.86
Zm00001d018126_P001	Maize	plastid	60.67	56.84
Solyc06g008440.1.1	Tomato	extracellular	5.46	53.12
Solyc06g008470.1.1	Tomato	extracellular	4.82	52.63
HORVU4Hr1G078120.4	Barley	cytosol, plastid	55.7	50.88
Solyc09g074520.2.1	Tomato	cytosol	45.26	48.54
Solyc02g079190.2.1	Tomato	cytosol	44.78	47.53
Solyc05g009260.1.1	Tomato	extracellular	5.78	44.44
Solyc06g008460.1.1	Tomato	extracellular	16.69	43.88
Solyc06g008810.2.1	Tomato	cytosol	29.53	43.71
Solyc06g008780.1.1	Tomato	extracellular	30.66	38.51
Solyc06g007830.1.1	Tomato	endoplasmic reticulum, extracellular	6.58	35.96
Solyc06g007840.2.1	Tomato	extracellular, plastid	4.65	35.37
Solyc06g084490.1.1	Tomato	plastid	10.43	30.95
Solyc05g052620.2.1	Tomato	cytosol	28.57	29.52

Protein Annotations

EnsemblPlants:Solyc04g074980.2.1	EnsemblPlantsGene:Solyc04g074980.2	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR43944	PANTHER:PTHR43944:SF8	SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI000276586E
UniProt:K4BU36	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	:	:	:

Description

No Description!

Coordinates

chr4:-:60859959..60862836

Molecular Weight (calculated)

69195.1 Da

IEP (calculated)

5.461

GRAVY (calculated)

-0.044

Length

623 amino acids

Sequence
(BLAST)

001: MSGSDNPSEM SEDEERPCPS DLTGGVTAKA RNCCFNAAVT GGGGGIFNFS PHPDQVLENV LENVLCFLTD RRDRNAASLV SKSWYRAEAL TRSEVFIGNC
101: YAVSPTRVTT RFKRVTSVAI KGKPRFADFS LLPPDWGAHF TPWASVLGDS YRGLEKLYLK RMSISDDDLG LLARCFPNFK ELVLVCCEGF GTSGLAIVAR
201: DCRQIRVLDL IESEVSDDEV DWISYFPENK TCLESLTFDC VECPIDFEAL EKLVIRSPSL KRLRLNRFVS ITQLYRLMIR APQLTNLGTG SFGASTVTDE
301: PDPDYASAFA ACKSMVCLSG FREIAPEYLP AIYPVCGNLT SLNLSYGANI NTEQFKSVIS RCHKLQVLWV FDSVCDEGLE AVAATCKDLR EIRVFPIEAR
401: EDADAPVSEV GLLAISEGCR KLKSILYFCQ KMTNAAVIAM SKNCPDLVVF RLCIMGRHLP DHVTNEPMDE GFGAIVKNCK KLTRLAVSGL LTDRAFSYIG
501: QYGKLVRTLS VAFAGNSDLA LKYVLEGCPK LQKLEIRDCP FGDLSLRSGL HHYYNMRFLW LSSCRVTLQG CQEIARQLPR LVVEVISGDD EEGSETNEHV
601: NTLYMYRSLD GPRADVPSFV QIL

Best Arabidopsis Sequence Match ( AT5G49980.1 )
(BLAST)

001: MTQDRSEMSE DDDDQQSPPL DLPSTAIADP CSSSSSPNKS RNCISNSQTF PDHVLENVLE NVLQFLDSRC DRNAASLVCK SWWRVEALTR SEVFIGNCYA
101: LSPARLTQRF KRVRSLVLKG KPRFADFNLM PPDWGANFAP WVSTMAQAYP CLEKVDLKRM FVTDDDLALL ADSFPGFKEL ILVCCEGFGT SGISIVANKC
201: RKLKVLDLIE SEVTDDEVDW ISCFPEDVTC LESLAFDCVE APINFKALEG LVARSPFLKK LRLNRFVSLV ELHRLLLGAP QLTSLGTGSF SHDEEPQSEQ
301: EPDYAAAFRA CKSVVCLSGF RELMPEYLPA IFPVCANLTS LNFSYANISP DMFKPIILNC HKLQVFWALD SICDEGLQAV AATCKELREL RIFPFDPRED
401: SEGPVSELGL QAISEGCRKL ESILYFCQRM TNAAVIAMSE NCPELTVFRL CIMGRHRPDH VTGKPMDEGF GAIVKNCKKL TRLAVSGLLT DQAFRYMGEY
501: GKLVRTLSVA FAGDSDMALR HVLEGCPRLQ KLEIRDSPFG DVALRSGMHR YYNMRFVWMS ACSLSKGCCK DIARAMPNLV VEVIGSDDDD DNRDYVETLY
601: MYRSLDGPRN DAPKFVTIL

Arabidopsis Description

AFB5AFB5 [Source:UniProtKB/TrEMBL;Acc:A0A178UB83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.