Factsheet for Solyc06g008780.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g112410.1.1
Solyc04g054280.1.1
Solyc04g079970.2.1
Solyc06g053840.2.1
Solyc09g083280.2.1
Solyc09g083290.2.1
Solyc12g089030.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	Solyc09g083290.2.1	AT1G04250.1	11713520
AT3G62980.1	Solyc09g083290.2.1	AT3G23050.1	11713520
AT3G62980.1	Solyc04g054280.1.1	AT4G14560.1	15546359
AT3G62980.1	Solyc06g053840.2.1	AT4G14560.1	15546359
AT3G62980.1	Solyc09g083280.2.1	AT4G14560.1	15546359
AT3G62980.1	Solyc04g079970.2.1	AT4G36800.1	12682009
AT3G62980.1	Solyc12g089030.1.1	AT4G36800.1	12682009
AT3G62980.1	Solyc03g112410.1.1	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g008460.1.1	Tomato	extracellular	41.94	87.76
Solyc06g008440.1.1	Tomato	extracellular	11.29	87.5
Solyc06g008810.2.1	Tomato	cytosol	69.15	81.47
Solyc06g008470.1.1	Tomato	extracellular	9.07	78.95
PGSC0003DMT400053430	Potato	cytosol	39.72	73.23
PGSC0003DMT400056570	Potato	cytosol	76.41	63.8
Solyc09g074520.2.1	Tomato	cytosol	62.5	53.36
GSMUA_Achr5P26930_001	Banana	cytosol	48.19	51.51
KRH68108	Soybean	cytosol	59.27	50.17
KRH31921	Soybean	cytosol	58.87	49.91
CDY68868	Canola	cytosol	54.23	49.81
KRG96377	Soybean	cytosol	58.67	49.57
KRH71533	Soybean	cytosol	58.47	49.57
CDY53998	Canola	cytosol	57.06	48.46
CDX76680	Canola	cytosol	57.66	48.07
CDY11468	Canola	cytosol	57.46	47.9
Bra007720.1-P	Field mustard	cytosol	57.46	47.9
AT3G62980.1	Thale cress	cytosol	57.26	47.81
Bra003518.1-P	Field mustard	cytosol	57.06	47.64
Solyc06g007840.2.1	Tomato	extracellular, plastid	7.86	47.56
PGSC0003DMT400013682	Potato	cytosol, mitochondrion	13.31	47.14
CDX67912	Canola	endoplasmic reticulum, golgi	57.26	44.03
GSMUA_Achr3P23850_001	Banana	cytosol	50.0	42.61
Bra014378.1-P	Field mustard	cytosol	51.81	41.05
CDX89163	Canola	cytosol	51.81	41.05
Zm00001d010863_P001	Maize	plastid	48.59	40.85
Os05t0150500-00	Rice	plastid	48.19	40.72
KXG21312	Sorghum	plastid	48.39	40.61
TraesCS1A01G091300.1	Wheat	cytosol	47.78	40.03
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	47.38	39.9
TraesCS1D01G099900.1	Wheat	cytosol	47.58	39.33
Solyc05g009260.1.1	Tomato	extracellular	6.05	37.04
HORVU1Hr1G021550.4	Barley	cytosol	46.57	35.98
Solyc06g007830.1.1	Tomato	endoplasmic reticulum, extracellular	8.27	35.96
Solyc02g079190.2.1	Tomato	cytosol	41.94	35.43
Solyc04g074980.2.1	Tomato	cytosol	38.51	30.66
Solyc06g084490.1.1	Tomato	plastid	10.48	24.76
Solyc05g052620.2.1	Tomato	cytosol	22.78	18.74

Protein Annotations

EnsemblPlants:Solyc06g008780.1.1	EnsemblPlantsGene:Solyc06g008780.1	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp
PANTHER:PTHR43944	PANTHER:PTHR43944:SF7	SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI000276691D	UniProt:K4C3Q8
MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	:	:	:	:

Description

No Description!

Coordinates

chr6:-:2707524..2710489

Molecular Weight (calculated)

54979.8 Da

IEP (calculated)

7.322

GRAVY (calculated)

0.119

Length

496 amino acids

Sequence
(BLAST)

001: MVGFVEHYCL SSLVFTGEKE FKSLHCCLST LAVAVGGKSS KNAVAKKCLS TLIRLLGKEA RAYSCMTWLQ QTKGMNLREL DLGESEAKDL SGHWLSHFPD
101: SCTSLVSLNI ACLASVVSFS ALERLVARSP YLRTLRLNRA VPIEKLPKLL RHASKLVDFG RRSYSADMQA DVSEVFINVS QAFSGCNQLK GLSGFWDDVP
201: AYFPTIYPVH SKLTSLNLSY ATIQIPDLSK LIGNCFNLQR LSGSAVLDYI EDSGLEEIAN TCKELQELRV FPFDLFAPGP NVSLTEQGLV AVSMGCPKLQ
301: SVLYFCRQMT NDALVSIARN RPNMIRYCLC NIEPQTPDYL ILEPLDTGFG AIVQQCKEVQ RLSFSGLLTD RVFEYIGVHA KKLEMLSLAF AGDSDLGLLY
401: VLSGCESLRK LETRDCPFGD EALLAIAAKL ETMRSLWMSN CSRTVSGRRF DTPGFVWIID EDATSTPYSN GISLWLLLRK TSGISSMLIF HLHLLA

Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)

001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL

Arabidopsis Description

TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.