Factsheet for Zm00001d010863_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010360_P001
Zm00001d013071_P001
Zm00001d013302_P002
Zm00001d013707_P001
Zm00001d014671_P001
Zm00001d016277_P002
Zm00001d018973_P001
Zm00001d024221_P001
Zm00001d030993_P001
Zm00001d033319_P001
Zm00001d033976_P002
Zm00001d034463_P001
Zm00001d036481_P001
Zm00001d037691_P003
Zm00001d038784_P001
Zm00001d039513_P001
Zm00001d041416_P001
Zm00001d041418_P001
Zm00001d042193_P001
Zm00001d043515_P002
Zm00001d050139_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	Zm00001d013302_P002	AT1G04250.1	11713520
AT3G62980.1	Zm00001d033976_P002	AT1G04250.1	11713520
AT3G62980.1	Zm00001d041416_P001	AT1G04250.1	11713520
AT3G62980.1	Zm00001d013302_P002	AT3G23050.1	11713520
AT3G62980.1	Zm00001d033976_P002	AT3G23050.1	11713520
AT3G62980.1	Zm00001d041416_P001	AT3G23050.1	11713520
AT3G62980.1	Zm00001d013071_P001	AT4G14560.1	15546359
AT3G62980.1	Zm00001d013707_P001	AT4G14560.1	15546359
AT3G62980.1	Zm00001d018973_P001	AT4G14560.1	15546359
AT3G62980.1	Zm00001d030993_P001	AT4G14560.1	15546359
AT3G62980.1	Zm00001d033319_P001	AT4G14560.1	15546359
AT3G62980.1	Zm00001d034463_P001	AT4G14560.1	15546359
AT3G62980.1	Zm00001d041418_P001	AT4G14560.1	15546359
AT3G62980.1	Zm00001d014671_P001	AT4G36800.1	12682009
AT3G62980.1	Zm00001d036481_P001	AT4G36800.1	12682009
AT3G62980.1	Zm00001d024221_P001	AT5G63110.1	12445118
AT3G62980.1	Zm00001d050139_P001	AT5G63110.1	12445118
AT4G03190.1	Zm00001d013302_P002	AT3G23050.1	15992545
AT4G03190.1	Zm00001d033976_P002	AT3G23050.1	15992545
AT4G03190.1	Zm00001d041416_P001	AT3G23050.1	15992545
AT4G03190.1	Zm00001d042193_P001	AT4G02570.1	15992545
AT4G03190.1	Zm00001d010360_P001	AT5G25890.1	21734647
AT4G03190.1	Zm00001d016277_P002	AT5G25890.1	21734647
AT4G03190.1	Zm00001d037691_P003	AT5G25890.1	21734647
AT4G03190.1	Zm00001d038784_P001	AT5G25890.1	21734647
AT4G03190.1	Zm00001d039513_P001	AT5G25890.1	21734647
AT4G03190.1	Zm00001d043515_P002	AT5G25890.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG21312	Sorghum	plastid	96.1	95.94
Os05t0150500-00	Rice	plastid	89.83	90.29
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	85.76	85.91
TraesCS1A01G091300.1	Wheat	cytosol	85.93	85.64
TraesCS1D01G099900.1	Wheat	cytosol	85.93	84.5
HORVU1Hr1G021550.4	Barley	cytosol	83.9	77.1
GSMUA_Achr5P26930_001	Banana	cytosol	57.29	72.84
Solyc06g008470.1.1	Tomato	extracellular	6.95	71.93
GSMUA_Achr3P23850_001	Banana	cytosol	70.68	71.65
Solyc06g008440.1.1	Tomato	extracellular	6.95	64.06
PGSC0003DMT400093216	Potato	mitochondrion	16.61	64.05
VIT_07s0104g01320.t01	Wine grape	cytosol	60.85	62.33
PGSC0003DMT400029517	Potato	cytosol	61.19	62.13
VIT_14s0030g01240.t01	Wine grape	cytosol	61.02	61.96
Solyc09g074520.2.1	Tomato	cytosol	61.02	61.96
PGSC0003DMT400053430	Potato	cytosol	27.97	61.34
KRH31921	Soybean	cytosol	60.68	61.2
KRH71533	Soybean	cytosol	60.51	61.03
KRG96377	Soybean	cytosol	60.68	60.99
CDY68868	Canola	cytosol	55.59	60.74
KRH68108	Soybean	cytosol	60.0	60.41
CDY53998	Canola	cytosol	59.49	60.1
AT3G62980.1	Thale cress	cytosol	59.83	59.43
AT4G03190.1	Thale cress	cytosol, plastid	58.81	59.32
Bra003518.1-P	Field mustard	cytosol	59.49	59.09
PGSC0003DMT400061752	Potato	plastid	57.97	58.97
Bra034191.1-P	Field mustard	cytosol	58.14	58.63
CDX76680	Canola	cytosol	58.81	58.32
CDY53774	Canola	cytosol	57.8	58.19
Bra000842.1-P	Field mustard	cytosol	57.8	58.19
CDY11468	Canola	cytosol	58.64	58.15
Bra007720.1-P	Field mustard	cytosol	58.64	58.15
PGSC0003DMT400056570	Potato	cytosol	58.47	58.08
CDX90899	Canola	cytosol	57.29	57.68
Solyc06g008460.1.1	Tomato	extracellular	23.05	57.38
VIT_12s0035g00130.t01	Wine grape	cytosol, extracellular, nucleus	14.07	56.46
Solyc06g008810.2.1	Tomato	cytosol	40.0	56.06
Zm00001d003911_P003	Maize	cytosol	54.58	56.0
Zm00001d025268_P001	Maize	cytosol	53.56	55.15
PGSC0003DMT400008765	Potato	cytosol	10.0	55.14
CDY21947	Canola	plastid, vacuole	57.8	54.47
CDX67912	Canola	endoplasmic reticulum, golgi	59.49	54.42
CDY22108	Canola	endoplasmic reticulum, golgi, plastid, vacuole	58.14	53.68
PGSC0003DMT400013682	Potato	cytosol, mitochondrion	12.54	52.86
Zm00001d007357_P005	Maize	cytosol	49.15	50.61
Bra014378.1-P	Field mustard	cytosol	53.39	50.32
CDX89163	Canola	cytosol	53.39	50.32
Solyc05g009260.1.1	Tomato	extracellular	6.78	49.38
Solyc06g008780.1.1	Tomato	extracellular	40.85	48.59
Solyc06g007840.2.1	Tomato	extracellular, plastid	6.44	46.34
Solyc06g007830.1.1	Tomato	endoplasmic reticulum, extracellular	8.31	42.98
Zm00001d048233_P001	Maize	cytosol	42.03	41.47
Zm00001d027975_P001	Maize	cytosol	41.53	40.97
Zm00001d018126_P001	Maize	plastid	46.1	40.9
Zm00001d052188_P001	Maize	plastid	46.1	40.84
Solyc06g084490.1.1	Tomato	plastid	11.02	30.95
Zm00001d038273_P001	Maize	cytosol	29.32	28.88
Zm00001d010082_P001	Maize	cytosol	29.32	28.88
Zm00001d012338_P001	Maize	cytosol	29.15	28.86
Zm00001d042833_P001	Maize	cytosol	29.15	28.76
Zm00001d028543_P001	Maize	cytosol	28.47	28.43
Zm00001d047848_P001	Maize	cytosol	27.97	27.92

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:103635896	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	ProteinID:AQK95133.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611
InterPro:IPR001810	InterPro:IPR032675	UniProt:K7UXQ0	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR43944	PANTHER:PTHR43944:SF7	SMART:SM00367	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI0002215DD3	EnsemblPlantsGene:Zm00001d010863	EnsemblPlants:Zm00001d010863_P001	EnsemblPlants:Zm00001d010863_T001	SEG:seg

Description

Protein TRANSPORT INHIBITOR RESPONSE 1

Coordinates

chr8:-:130918702..130923954

Molecular Weight (calculated)

64916.6 Da

IEP (calculated)

7.147

GRAVY (calculated)

0.098

Length

590 amino acids

Sequence
(BLAST)

001: MGRGGARAAP AAAVPPWHAL PDEVWEHAFS FLPADSDRGA AACACHAWLR FERRSRRRLA VANCYAASPR DAVERFPAVR AVEVKGKPHF ADFGLVPPAW
101: GADAAPWVAA AAAGWPLLEE ISFKRMVVTD DCLEMIAASF RNFQVLRLVS CEGFSTAGLA AIAAACRNLR ELDLQENEIE DCSIHWLSLF PVSFTSLVTL
201: NFSCLEGDVN ITVLEQLVTR CSNLKTLKLN NAIPLDKLAN LLRKAPQIVE LGTGRFSADY HPDLFSKLEA AFAGCKSLRR LSGAWDAVPE YLPAFYCVCE
301: GLTSLNLSYA TVRGPELIKF ISRCKNLQLL WVMDLIEDHG LAVVASSCNK LQELRVFPSA PFEAAEQVSL TERGLVDVSA SCPMLESVLY FCRRMTNEAL
401: ITIAKNRPNF TCFRLCIIEP HTPDYITHQP LDAGFSAIVE SCKGLRRLSV SGLLTDSVFK SIGAHADRLE MLSIAFAGNS DLGLHYILSG CKSLKKLEIR
501: DCPFGDKPLL ANAAKLETMR SLWMSTCSMT LGACRQLARK MPRLSVEVMN DPRRGFPLDS LTDESPVETL YVYRTISGPR SDTPACVQIL

Best Arabidopsis Sequence Match ( AT4G03190.1 )
(BLAST)

001: MGLRFPPKVL EHILSFIDSN EDRNSVSLVC KSWFETERKT RKRVFVGNCY AVSPAAVTRR FPEMRSLTLK GKPHFADYNL VPDGWGGYAW PWIEAMAAKS
101: SSLEEIRMKR MVVTDECLEK IAASFKDFKV LVLTSCEGFS TDGIAAIAAT CRNLRVLELR ECIVEDLGGD WLSYFPESST SLVSLDFSCL DSEVKISDLE
201: RLVSRSPNLK SLKLNPAVTL DGLVSLLRCA PQLTELGTGS FAAQLKPEAF SKLSEAFSNC KQLQSLSGLW DVLPEYLPAL YSVCPGLTSL NLSYATVRMP
301: DLVELLRRCS KLQKLWVMDL IEDKGLEAVA SYCKELRELR VFPSEPDLDA TNIPLTEQGL VFVSKGCRKL ESVLYFCVQF TNAALFTIAR KRPNLKCFRL
401: CVIEPFAPDY KTNEPLDKGF KAIAEGCRDL RRLSVSGLLS DKAFKYIGKH AKKVRMLSIA FAGDSDLMLH HLLSGCESLK KLEIRDCPFG DTALLEHAAK
501: LETMRSLWMS SCFVSFGACK LLSQKMPRLN VEVIDEHPPE SRPESSPVER IYIYRTVAGP RMDTPEFVWT IHKNPENGVS HLAIK

Arabidopsis Description

GRH1GRR1-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR12]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.