Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- peroxisome 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cytosol:
25203637
nucleus: 25203637 |
gfp PMID:
25203637
doi
Center for Plant Molecular Biology (ZMBP), Central Facilities, University of Tübingen, Tübingen, Germany., Institute for Crop Science, Bioinformatics Unit, University of Hohenheim, Stuttgart, Germany., Institute of Crop Science and Resource Conservation (INRES), Crop Functional Genomics, University of Bonn, Bonn, Germany., Institute of Crop Science and Resource Conservation (INRES), Crop Functional Genomics, University of Bonn, Bonn, Germany; College of Resources and Environment (RCBB), Southwest University, Chongqing, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d010360_P001 | Maize | cytosol, nucleus | 72.47 | 78.51 |
| EES17832 | Sorghum | nucleus | 74.49 | 76.03 |
| TraesCS1A01G122600.2 | Wheat | nucleus | 55.06 | 60.44 |
| TraesCS1D01G123500.1 | Wheat | nucleus | 54.25 | 59.03 |
| HORVU1Hr1G028170.4 | Barley | cytosol, nucleus, plastid | 55.06 | 55.06 |
| Zm00001d039513_P001 | Maize | cytosol, nucleus, plastid | 49.39 | 53.28 |
| CDX87072 | Canola | cytosol | 27.94 | 39.43 |
| AT5G25890.1 | Thale cress | nucleus | 27.53 | 38.86 |
| Bra018938.1-P | Field mustard | nucleus | 39.68 | 38.74 |
| CDY33844 | Canola | nucleus | 39.68 | 38.74 |
| CDY22876 | Canola | nucleus | 39.68 | 38.74 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 27.13 | 38.51 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 27.13 | 38.51 |
| Bra009867.1-P | Field mustard | cytosol | 27.13 | 38.07 |
| Bra036557.1-P | Field mustard | nucleus | 26.72 | 37.71 |
| CDX87863 | Canola | nucleus | 38.46 | 37.4 |
| AT3G16500.1 | Thale cress | nucleus | 39.68 | 36.43 |
| PGSC0003DMT400006709 | Potato | nucleus | 41.3 | 36.04 |
| CDY43104 | Canola | nucleus | 38.87 | 35.96 |
| CDY34957 | Canola | nucleus | 38.87 | 35.69 |
| Bra021184.1-P | Field mustard | nucleus | 38.87 | 35.69 |
| AT1G51950.1 | Thale cress | nucleus | 38.46 | 35.58 |
| CDY64626 | Canola | cytosol | 38.46 | 35.32 |
| Bra014303.1-P | Field mustard | nucleus | 38.46 | 35.19 |
| CDX82399 | Canola | nucleus | 38.46 | 34.93 |
| Bra001634.1-P | Field mustard | nucleus | 38.46 | 34.93 |
| CDY46538 | Canola | nucleus | 38.06 | 34.81 |
| CDY53439 | Canola | nucleus | 38.46 | 34.8 |
| CDX92077 | Canola | nucleus | 40.08 | 34.74 |
| Bra022164.1-P | Field mustard | nucleus | 40.08 | 34.74 |
| Solyc03g121060.2.1 | Tomato | nucleus | 40.08 | 34.49 |
| CDX75884 | Canola | cytosol | 37.65 | 34.32 |
| CDY19790 | Canola | cytosol | 26.72 | 33.85 |
| KRH09948 | Soybean | nucleus | 41.3 | 31.88 |
| Zm00001d016277_P002 | Maize | nucleus | 37.65 | 31.1 |
| KRH44271 | Soybean | nucleus | 38.46 | 30.35 |
| KRH47203 | Soybean | nucleus | 38.87 | 30.28 |
| VIT_04s0008g00220.t01 | Wine grape | nucleus | 41.7 | 29.86 |
| KRH23388 | Soybean | nucleus | 40.08 | 28.61 |
| Zm00001d049715_P001 | Maize | nucleus | 25.91 | 27.47 |
| Zm00001d000288_P001 | Maize | cytosol | 20.65 | 25.89 |
| Zm00001d018414_P001 | Maize | nucleus | 21.05 | 25.24 |
| Zm00001d043515_P002 | Maize | cytosol, mitochondrion, nucleus | 36.03 | 24.93 |
| Zm00001d040541_P001 | Maize | nucleus, plastid | 18.22 | 24.86 |
| Zm00001d008201_P001 | Maize | cytosol | 12.96 | 24.62 |
| Zm00001d045203_P001 | Maize | cytosol | 21.46 | 24.54 |
| Zm00001d038784_P001 | Maize | nucleus | 33.6 | 23.51 |
| VIT_09s0002g03410.t01 | Wine grape | nucleus | 41.7 | 23.46 |
| Zm00001d051911_P002 | Maize | nucleus | 27.13 | 22.79 |
| Zm00001d004697_P001 | Maize | nucleus | 22.67 | 16.05 |
| Zm00001d049141_P002 | Maize | nucleus | 21.86 | 15.21 |
Protein Annotations
| EntrezGene:100284398 | MapMan:11.2.2.1.2 | Gene3D:3.10.20.90 | UniProt:A0A1D6LZR0 | ProteinID:AQK84570.1 | ProteinID:AQK84571.1 |
| InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
| GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF33 | SUPFAM:SSF54277 | UniParc:UPI0008456599 | EnsemblPlantsGene:Zm00001d037691 | EnsemblPlants:Zm00001d037691_P003 |
| EnsemblPlants:Zm00001d037691_T003 | SEG:seg | : | : | : | : |
Description
barren inflorescence4IAA16-auxin-responsive Aux/IAA family member
Coordinates
chr6:-:134088981..134092670
Molecular Weight (calculated)
25545.8 Da
IEP (calculated)
6.285
GRAVY (calculated)
-0.373
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MAWNGRFGDD EEGSGLELSL SLPGYFSGSP TQAAAGFEDK ADGGSAAAAA AGRAKGSNGF KARPAAAAPV VGWPPVRAFR RNLASASSKP SRDPPPSHRG
101: NESASVGAGG KAVEGGNKGL FVKVNMDGVP IGRKLDLGGH AGYDTLTAAV DHLFRGLLSA QTSGPGGERQ AVAGILNGGG EYTLVYEDDE GDQMLVGDVP
201: WQMFAATARR LRVLRSSDLN PSSVTKGSDQ EESCSLVLRW RTLESQL
101: NESASVGAGG KAVEGGNKGL FVKVNMDGVP IGRKLDLGGH AGYDTLTAAV DHLFRGLLSA QTSGPGGERQ AVAGILNGGG EYTLVYEDDE GDQMLVGDVP
201: WQMFAATARR LRVLRSSDLN PSSVTKGSDQ EESCSLVLRW RTLESQL
001: MEGYSRNGEI SPKLLDLMIP QERRNWFHDE KNSVFKTEEK KLELKLGPPG EEDDDESMIR HMKKEPKDKS ILSLAGKYFS PSSTKTTSHK RTAPGPVVGW
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
Arabidopsis Description
IAA18Auxin-responsive protein IAA18 [Source:UniProtKB/Swiss-Prot;Acc:O24408]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.