Factsheet for Zm00001d051911_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31359	Sorghum	cytosol, nucleus, peroxisome	88.44	87.84
Os02t0817600-02	Rice	nucleus	72.11	75.44
TraesCS6B01G432800.1	Wheat	nucleus	70.41	74.73
TraesCS6D01G378300.1	Wheat	cytosol, nucleus, plastid	68.37	71.02
TraesCS6A01G392600.3	Wheat	cytosol, nucleus, plastid	68.71	70.88
HORVU6Hr1G091260.3	Barley	nucleus	66.67	69.75
GSMUA_Achr11P...	Banana	nucleus	42.18	41.33
Zm00001d045203_P001	Maize	cytosol	23.81	32.41
Zm00001d000288_P001	Maize	cytosol	21.43	31.98
Zm00001d018414_P001	Maize	nucleus	21.77	31.07
Zm00001d010360_P001	Maize	cytosol, nucleus	22.11	28.51
Zm00001d040541_P001	Maize	nucleus, plastid	17.35	28.18
Zm00001d008201_P001	Maize	cytosol	12.24	27.69
Zm00001d037691_P003	Maize	cytosol, nucleus	22.79	27.13
Zm00001d039513_P001	Maize	cytosol, nucleus, plastid	20.75	26.64
Zm00001d049715_P001	Maize	nucleus	21.09	26.61
Zm00001d016277_P002	Maize	nucleus	23.47	23.08
Zm00001d043515_P002	Maize	cytosol, mitochondrion, nucleus	24.83	20.45
Zm00001d038784_P001	Maize	nucleus	22.11	18.41
Zm00001d049141_P002	Maize	nucleus	21.09	17.46
Zm00001d004697_P001	Maize	nucleus	19.73	16.62

Protein Annotations

EntrezGene:100273242	Gene3D:3.10.20.90	MapMan:35.1	ProteinID:AQK55441.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987
InterPro:IPR000270	UniProt:K7U104	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734
PANTHER:PTHR31734:SF6	SUPFAM:SSF54277	UniParc:UPI000220B05E	EnsemblPlantsGene:Zm00001d051911	EnsemblPlants:Zm00001d051911_P002	EnsemblPlants:Zm00001d051911_T002
SEG:seg	:	:	:	:	:

Description

Aux/IAA-transcription factor 18Auxin-responsive protein IAA13

Coordinates

chr4:+:174427500..174429811

Molecular Weight (calculated)

31625.0 Da

IEP (calculated)

5.000

GRAVY (calculated)

-0.659

Length

294 amino acids

Sequence
(BLAST)

001: MRGGGAGPTA AFMSDEPPPA DAEEVEENSG AEEEDEETVV EQDDDELELG LCLGSKQQQQ QHPPPCRILT ARDLQPRSLS PDSSVSSSSP AAGAGTAAPS
101: KRAKADAAPN SPGTVASGHP QSSFGVVGWP PIRTFRMNSL FNQAKENASE AGAKKPIVEP DMQEDKEESK KGRTVGWVKV NMEGDIIGRK VDLNAHRSYK
201: TLASALELMF MKPSIGLCTS SSSKTLKLLD SSSEYQLTYE DRDGDWMLVG DVPWEMFVGS VKRLKIMRTS DAKGLGPRFQ GSHRPTAACT RGRT

Best Arabidopsis Sequence Match ( AT2G33310.2 )
(BLAST)

001: MITELEMGKG ESELELGLGL SLGGGTAAKI GKSGGGGAWG ERGRLLTAKD FPSVGSKRAA DSASHAGSSP PRSSSQVVGW PPIGSHRMNS LVNNQATKSA
101: REEEEAGKKK VKDDEPKDVT KKVNGKVQVG FIKVNMDGVA IGRKVDLNAH SSYENLAQTL EDMFFRTNPG TVGLTSQFTK PLRLLDGSSE FVLTYEDKEG
201: DWMLVGDVPW RMFINSVKRL RVMKTSEANG LAARNQEPNE RQRKQPV

Arabidopsis Description

IAA13Auxin-responsive protein IAA13 [Source:UniProtKB/Swiss-Prot;Acc:Q38831]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.