Factsheet for Zm00001d049715_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 25203637

gfp PMID: 25203637 doi

Y Ludwig, KW Berendzen, C Xu, HP Piepho, F Hochholdinger

Center for Plant Molecular Biology (ZMBP), Central Facilities, University of Tübingen, Tübingen, Germany., Institute for Crop Science, Bioinformatics Unit, University of Hohenheim, Stuttgart, Germany., Institute of Crop Science and Resource Conservation (INRES), Crop Functional Genomics, University of Bonn, Bonn, Germany., Institute of Crop Science and Resource Conservation (INRES), Crop Functional Genomics, University of Bonn, Bonn, Germany; College of Resources and Environment (RCBB), Southwest University, Chongqing, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13224	Sorghum	nucleus	84.55	81.74
Os08t0109400-01	Rice	nucleus	54.94	52.03
TraesCS7B01G222900.1	Wheat	nucleus	54.08	50.0
TraesCS7A01G322000.1	Wheat	nucleus	54.94	47.41
GSMUA_Achr7P03120_001	Banana	nucleus	45.92	43.5
HORVU7Hr1G077110.10	Barley	nucleus	54.94	39.75
TraesCS7D01G318900.2	Wheat	plastid	55.36	39.69
Zm00001d000288_P001	Maize	cytosol	24.89	29.44
Zm00001d039513_P001	Maize	cytosol, nucleus, plastid	27.9	28.38
Zm00001d010360_P001	Maize	cytosol, nucleus	27.47	28.07
Zm00001d008201_P001	Maize	cytosol	15.45	27.69
Zm00001d045203_P001	Maize	cytosol	24.46	26.39
Zm00001d037691_P003	Maize	cytosol, nucleus	27.47	25.91
Zm00001d018414_P001	Maize	nucleus	22.75	25.73
Zm00001d040541_P001	Maize	nucleus, plastid	19.74	25.41
Zm00001d016277_P002	Maize	nucleus	27.9	21.74
Zm00001d051911_P002	Maize	nucleus	26.61	21.09
Zm00001d004697_P001	Maize	nucleus	31.33	20.92
Zm00001d049141_P002	Maize	nucleus	31.33	20.56
Zm00001d043515_P002	Maize	cytosol, mitochondrion, nucleus	29.18	19.05
Zm00001d038784_P001	Maize	nucleus	26.18	17.28

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	ProteinID:AQK51180.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
UniProt:K7TU37	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF19
SUPFAM:SSF54277	UniParc:UPI000220D6E8	EnsemblPlantsGene:Zm00001d049715	EnsemblPlants:Zm00001d049715_P001	EnsemblPlants:Zm00001d049715_T001	:

Description

Aux/IAA-transcription factor 16IAA25-auxin-responsive Aux/IAA family member

Coordinates

chr4:-:41271800..41273024

Molecular Weight (calculated)

25574.3 Da

IEP (calculated)

7.506

GRAVY (calculated)

-0.678

Length

233 amino acids

Sequence
(BLAST)

001: MKLKQEQADD DCSKMQGGRG LMSSLELRLG MSSDNGDASC GGDPWLGVGV HPWSLASRQA EKVALEQDHQ QRSPPQPVGW PPVGAFRRSH LQVSSKTVEE
101: PAGKVKSGGE RLAPAATMFV KVNMEGCAVG RKVDLLAHRG YASLSRALQA MFRGFLSDGQ WRIVGSEDDA DDDNEQQPEP TKKGGSKSNK KAYILLYEDN
201: EGDRMLVGDV PWELFMASVK RLYIAQDPRK TKN

Best Arabidopsis Sequence Match ( AT3G16500.1 )
(BLAST)

001: MEGCPRNREI GPKLLDLIPQ GRKWYQEDKN NTDQEKKLEL RLGPPGGDEE DHSAIKKKNT EIRNIKKETE DKSFHCFNGN HFSPSNKTTS VPHISQKRTA
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH

Arabidopsis Description

IAA26Auxin-responsive protein IAA26 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAL2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.