Factsheet for Os08t0109400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G222900.1	Wheat	nucleus	68.29	66.67
TraesCS7A01G322000.1	Wheat	nucleus	67.89	61.85
EES13224	Sorghum	nucleus	56.5	57.68
Zm00001d049715_P001	Maize	nucleus	52.03	54.94
HORVU7Hr1G077110.10	Barley	nucleus	67.07	51.24
TraesCS7D01G318900.2	Wheat	plastid	67.07	50.77
GSMUA_Achr7P03120_001	Banana	nucleus	47.97	47.97
Os01t0286900-01	Rice	nucleus	17.48	37.39
Os02t0805100-01	Rice	nucleus	21.95	29.67
Os06t0166500-01	Rice	nucleus	21.95	29.51
Os01t0190300-01	Rice	nucleus	27.24	28.15
Os02t0723400-02	Rice	nucleus	21.14	25.37
Os02t0228900-01	Rice	nucleus	29.27	24.0
Os02t0817600-02	Rice	nucleus	26.02	22.78
Os01t0741900-01	Rice	nucleus	28.05	20.6
Os05t0523300-01	Rice	nucleus	26.83	20.18
Os11t0221000-01	Rice	nucleus	22.76	19.44

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	EntrezGene:4344471	EMBL:AK068232	EMBL:AP004584	InterPro:AUX/IAA_dom
InterPro:AUX_IAA	ProteinID:BAF22725.1	ProteinID:BAT03487.1	ProteinID:EAZ36954.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	EnsemblPlantsGene:Os08g0109400
EnsemblPlants:Os08t0109400-01	UniProt:P0C128	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734
PANTHER:PTHR31734:SF19	SUPFAM:SSF54277	UniParc:UPI00006842C3	RefSeq:XP_015648256.1	RefSeq:XP_015648257.1	RefSeq:XP_015648258.1
RefSeq:XP_015648260.1	RefSeq:XP_015648261.1	:	:	:	:

Description

IAA25AUX/IAA protein family protein. (Os08t0109400-01)

Coordinates

chr8:+:468151..473510

Molecular Weight (calculated)

27325.3 Da

IEP (calculated)

8.620

GRAVY (calculated)

-0.630

Length

246 amino acids

Sequence
(BLAST)

001: MKSSSVAPRL KQERQDDCKF QEGDVNSLEL RLGISSDNDQ ISGGGAASPW LGVGVHPWSL AARQGKAALE QAHQRPNECA VQRENRAASS AQLVGWPPVR
101: AFRKNLSTPK PADADDLMNK VKLCSDEGHG SRCAAQERRS SSTMFVKVNL EGYAVGRKID LKAHRSYDSL SQALQSMFHG FLSDGIATRD NELQQMEEGS
201: KKRYVLVYED NEGDRMLVGD VPWELFIASV KRLYIAQDPR VHAKLR

Best Arabidopsis Sequence Match ( AT1G51950.1 )
(BLAST)

001: MEGYSRNGEI SPKLLDLMIP QERRNWFHDE KNSVFKTEEK KLELKLGPPG EEDDDESMIR HMKKEPKDKS ILSLAGKYFS PSSTKTTSHK RTAPGPVVGW
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR

Arabidopsis Description

IAA18Auxin-responsive protein IAA18 [Source:UniProtKB/Swiss-Prot;Acc:O24408]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.