Factsheet for Os11t0221000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G016160.1	Barley	plastid	52.43	42.06
TraesCS4A01G204900.1	Wheat	nucleus	52.08	41.55
TraesCS4B01G108600.2	Wheat	nucleus	51.39	41.11
KXG28215	Sorghum	nucleus	51.04	41.06
Zm00001d049141_P002	Maize	nucleus	50.0	40.56
TraesCS4D01G105700.1	Wheat	cytosol	52.43	40.16
Zm00001d004697_P001	Maize	nucleus	47.92	39.54
Os08t0109400-01	Rice	nucleus	19.44	22.76
GSMUA_Achr9P08370_001	Banana	nucleus	16.67	18.9
GSMUA_Achr6P29100_001	Banana	nucleus	19.1	18.58
Os02t0228900-01	Rice	nucleus	17.71	17.0
Os01t0286900-01	Rice	nucleus	6.6	16.52
Os01t0190300-01	Rice	nucleus	13.54	16.39
Os06t0166500-01	Rice	nucleus	10.07	15.85
Os01t0741900-01	Rice	nucleus	18.4	15.82
Os02t0805100-01	Rice	nucleus	9.72	15.38
Os02t0817600-02	Rice	nucleus	13.89	14.23
Os05t0523300-01	Rice	nucleus	14.93	13.15
Os02t0723400-02	Rice	nucleus	9.03	12.68

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	ProteinID:ABG22417.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	ProteinID:BAT13251.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987
UniProt:H2KW23	InterPro:IPR000270	EnsemblPlantsGene:Os11g0221000	EnsemblPlants:Os11t0221000-01	InterPro:PB1_dom	PFAM:PF02309
PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF35	UniParc:UPI0000D89A25	SEG:seg	:

Description

IAA27Aux/IAA_ARF_dimerisation domain containing protein. (Os11t0221000-01)

Coordinates

chr11:+:6335893..6342309

Molecular Weight (calculated)

29916.5 Da

IEP (calculated)

10.155

GRAVY (calculated)

-0.211

Length

288 amino acids

Sequence
(BLAST)

001: MMNLISFETP PLGRRSQDGG SSSSSITAAT TTTNKAKEAA SHLDLSLGIS LSPGGGGGDA GTKASSCCYG GGGDGGGCMG SGMLTAGVLG VGHGGSSHDN
101: TTASSGGGGS WTAAFMPSPT GFMHPWSLAA RQQKAAAEQE RSGVARLPPA TTTYMPRAAA TVISLPAAVG WPPVHTSRRN LVATINNVLK PDTTAAVKPD
201: RPTQATAMFA ADETTAPPPR SAAAATEASR TLNMFAKVHM DGYKVGRKIN LRAHRNYDSL RRVLTKMTHN FFCREYPIFL FYFFLITG

Best Arabidopsis Sequence Match ( AT1G51950.1 )
(BLAST)

001: MEGYSRNGEI SPKLLDLMIP QERRNWFHDE KNSVFKTEEK KLELKLGPPG EEDDDESMIR HMKKEPKDKS ILSLAGKYFS PSSTKTTSHK RTAPGPVVGW
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR

Arabidopsis Description

IAA18Auxin-responsive protein IAA18 [Source:UniProtKB/Swiss-Prot;Acc:O24408]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.