Factsheet for TraesCS4D01G105700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G108600.2	Wheat	nucleus	86.97	90.83
TraesCS4A01G204900.1	Wheat	nucleus	84.57	88.09
HORVU4Hr1G016160.1	Barley	plastid	79.79	83.57
KXG28215	Sorghum	nucleus	50.0	52.51
Os11t0221000-01	Rice	nucleus	40.16	52.43
Zm00001d049141_P002	Maize	nucleus	46.81	49.58
Zm00001d004697_P001	Maize	nucleus	44.95	48.42
TraesCS7D01G128200.1	Wheat	cytosol, mitochondrion	10.64	39.22
TraesCS7D01G127900.1	Wheat	nucleus	12.23	30.67
TraesCS1D01G123500.1	Wheat	nucleus	18.35	30.4
TraesCS7D01G128100.1	Wheat	nucleus	12.77	30.0
GSMUA_Achr9P08370_001	Banana	nucleus	19.41	28.74
TraesCS6D01G357500.1	Wheat	cytosol, mitochondrion, nucleus	13.03	28.49
TraesCS7D01G127800.1	Wheat	cytosol	11.97	28.48
TraesCS3D01G110200.1	Wheat	nucleus	17.29	28.26
GSMUA_Achr6P29100_001	Banana	nucleus	20.48	26.01
TraesCS1D01G345400.1	Wheat	nucleus	19.15	24.41
TraesCS7D01G318900.2	Wheat	plastid	19.41	22.46
TraesCS1D01G084100.1	Wheat	nucleus, plastid	12.23	22.22
TraesCS6D01G378300.1	Wheat	cytosol, nucleus, plastid	16.22	21.55
TraesCS3D01G276600.1	Wheat	cytosol, mitochondrion, nucleus	18.35	20.6

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR000270
InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF35	SUPFAM:SSF54277
EnsemblPlantsGene:TraesCS4D01G105700	EnsemblPlants:TraesCS4D01G105700.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4D:+:84291890..84297256

Molecular Weight (calculated)

39683.6 Da

IEP (calculated)

7.743

GRAVY (calculated)

-0.269

Length

376 amino acids

Sequence
(BLAST)

001: MMNLISFETP PPLGRQESTA ATAATGMKVA KEASSSDACF HGSNLDLSLG ISLSPGGNCS AASCGGAAMA SYNGGQGGGN VGRVQSSDMV IASTATANTL
101: SAGRGGNCHG IVPSSSWAAV FMPSPTGFMH PWSLAARQQK AAAEQDRSIA SASVATTYVT SDASVVSVPS AAVGWPPVHT SRRHLVTATH VPKPDAGVKQ
201: PDSLNNTKMT AAASPADDDK EVAGAPRSCT VTAEPQRLPA NMFAKVHMDG CLIVRKINLR AHRSYDSLSR ALTKMTRNFF CPADYQSSDS GEGDCANSDD
301: FIFLYEDFEG DRMLVGDVPW ELFLATAKKL CIARHPTSXK KNSPNSSSEN RHTKLDRWHM VAYTCTLYMH ISRSEV

Best Arabidopsis Sequence Match ( AT1G51950.1 )
(BLAST)

001: MEGYSRNGEI SPKLLDLMIP QERRNWFHDE KNSVFKTEEK KLELKLGPPG EEDDDESMIR HMKKEPKDKS ILSLAGKYFS PSSTKTTSHK RTAPGPVVGW
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR

Arabidopsis Description

IAA18Auxin-responsive protein IAA18 [Source:UniProtKB/Swiss-Prot;Acc:O24408]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.