Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G276500.1 | Wheat | cytosol, mitochondrion, nucleus | 97.31 | 95.6 |
| TraesCS3B01G310500.1 | Wheat | cytosol, mitochondrion, nucleus | 95.52 | 93.29 |
| HORVU3Hr1G070620.5 | Barley | cytosol, mitochondrion, nucleus | 88.96 | 84.42 |
| Os01t0741900-01 | Rice | nucleus | 71.34 | 71.34 |
| Zm00001d043515_P002 | Maize | cytosol, mitochondrion, nucleus | 62.99 | 59.1 |
| KXG33336 | Sorghum | nucleus | 64.18 | 58.9 |
| TraesCS1D01G345400.1 | Wheat | nucleus | 46.87 | 53.22 |
| TraesCS1D01G123500.1 | Wheat | nucleus | 33.13 | 48.9 |
| CDX87072 | Canola | cytosol | 24.18 | 46.29 |
| AT5G25890.1 | Thale cress | nucleus | 24.18 | 46.29 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 23.88 | 45.98 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 23.88 | 45.98 |
| Bra036557.1-P | Field mustard | nucleus | 23.88 | 45.71 |
| Solyc03g121060.2.1 | Tomato | nucleus | 39.1 | 45.64 |
| Bra009867.1-P | Field mustard | cytosol | 23.88 | 45.45 |
| PGSC0003DMT400006709 | Potato | nucleus | 38.21 | 45.23 |
| KRH09948 | Soybean | nucleus | 42.39 | 44.38 |
| TraesCS7D01G128200.1 | Wheat | cytosol, mitochondrion | 13.13 | 43.14 |
| VIT_04s0008g00220.t01 | Wine grape | nucleus | 43.58 | 42.32 |
| AT3G16500.1 | Thale cress | nucleus | 33.13 | 41.26 |
| AT1G51950.1 | Thale cress | nucleus | 32.84 | 41.2 |
| CDY19790 | Canola | cytosol | 23.88 | 41.03 |
| CDY34957 | Canola | nucleus | 32.84 | 40.89 |
| CDY64626 | Canola | cytosol | 32.84 | 40.89 |
| Bra021184.1-P | Field mustard | nucleus | 32.84 | 40.89 |
| TraesCS3D01G110200.1 | Wheat | nucleus | 28.06 | 40.87 |
| CDY46538 | Canola | nucleus | 32.84 | 40.74 |
| Bra014303.1-P | Field mustard | nucleus | 32.84 | 40.74 |
| CDX87863 | Canola | nucleus | 30.75 | 40.55 |
| KRH23388 | Soybean | nucleus | 41.79 | 40.46 |
| CDX75884 | Canola | cytosol | 32.24 | 39.85 |
| Bra001634.1-P | Field mustard | nucleus | 32.24 | 39.71 |
| CDX82399 | Canola | nucleus | 32.24 | 39.71 |
| CDY22876 | Canola | nucleus | 29.85 | 39.53 |
| KRH47203 | Soybean | nucleus | 37.31 | 39.43 |
| CDY43104 | Canola | nucleus | 31.34 | 39.33 |
| KRH44271 | Soybean | nucleus | 36.72 | 39.3 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.12 | 39.29 |
| CDY53439 | Canola | nucleus | 31.94 | 39.19 |
| Bra018938.1-P | Field mustard | nucleus | 29.55 | 39.13 |
| CDY33844 | Canola | nucleus | 28.96 | 38.34 |
| CDX92077 | Canola | nucleus | 31.64 | 37.19 |
| Bra022164.1-P | Field mustard | nucleus | 31.64 | 37.19 |
| GSMUA_Achr7P13680_001 | Banana | nucleus | 40.6 | 37.06 |
| TraesCS7D01G127900.1 | Wheat | nucleus | 15.82 | 35.33 |
| TraesCS7D01G128100.1 | Wheat | nucleus | 16.12 | 33.75 |
| TraesCS7D01G127800.1 | Wheat | cytosol | 15.52 | 32.91 |
| VIT_09s0002g03410.t01 | Wine grape | nucleus | 42.99 | 32.8 |
| TraesCS6D01G357500.1 | Wheat | cytosol, mitochondrion, nucleus | 14.63 | 28.49 |
| TraesCS6D01G378300.1 | Wheat | cytosol, nucleus, plastid | 21.79 | 25.8 |
| TraesCS7D01G318900.2 | Wheat | plastid | 21.19 | 21.85 |
| TraesCS1D01G084100.1 | Wheat | nucleus, plastid | 11.64 | 18.84 |
| TraesCS4D01G105700.1 | Wheat | cytosol | 20.6 | 18.35 |
Protein Annotations
| MapMan:11.2.2.1.2 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF90 | SUPFAM:SSF54277 |
| EnsemblPlantsGene:TraesCS3D01G276600 | EnsemblPlants:TraesCS3D01G276600.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3D:-:383545844..383547886
Molecular Weight (calculated)
36174.9 Da
IEP (calculated)
8.468
GRAVY (calculated)
-0.634
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MEESSMKREA MPRLLDLIPD EKEWSLRGGA PRQGRSKNTG FGSDEDEKLE LKLGLPGLVQ EEPAASSREK RVHQESPALS LGYPPKHSTA TTGAKRGFLD
101: TVEAKAQGYE KEQARAAACG KELAVEENTA AVGERKKGCC PPPPPAHAPP ATPARNIGNR PQARGRGAAA PVVGWPPIRS FRRNLASTSA SKQPPEPQIG
201: EADAKAVLDC KKSPLVKINM DGIPIGRKVD LAACDSYERL SLAVKDLFHG FLQVQRDPSK VERTQQGADE KIFSQLLDGS GEYTLVYEDG EGDRMLVGDV
301: PWNVFVSTAK RLRVLRSSEL SHGLIGATPE RAANG
101: TVEAKAQGYE KEQARAAACG KELAVEENTA AVGERKKGCC PPPPPAHAPP ATPARNIGNR PQARGRGAAA PVVGWPPIRS FRRNLASTSA SKQPPEPQIG
201: EADAKAVLDC KKSPLVKINM DGIPIGRKVD LAACDSYERL SLAVKDLFHG FLQVQRDPSK VERTQQGADE KIFSQLLDGS GEYTLVYEDG EGDRMLVGDV
301: PWNVFVSTAK RLRVLRSSEL SHGLIGATPE RAANG
001: MEGCPRNREI GPKLLDLIPQ GRKWYQEDKN NTDQEKKLEL RLGPPGGDEE DHSAIKKKNT EIRNIKKETE DKSFHCFNGN HFSPSNKTTS VPHISQKRTA
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH
Arabidopsis Description
IAA26Auxin-responsive protein IAA26 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.