Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G381900.1 | Wheat | cytosol, mitochondrion, nucleus | 74.6 | 92.89 |
| TraesCS5A01G378300.2 | Wheat | cytosol, mitochondrion, nucleus | 81.9 | 84.59 |
| HORVU5Hr1G093580.2 | Barley | cytosol, nucleus, peroxisome | 73.65 | 82.56 |
| Os03t0633500-01 | Rice | cytosol | 49.52 | 66.95 |
| VIT_14s0081g00010.t01 | Wine grape | nucleus, plastid | 35.87 | 66.47 |
| TraesCS5D01G069300.1 | Wheat | nucleus | 51.11 | 63.89 |
| OQU91311 | Sorghum | cytosol, mitochondrion, nucleus | 52.7 | 62.88 |
| GSMUA_Achr10P... | Banana | nucleus | 46.98 | 61.41 |
| GSMUA_Achr8P20610_001 | Banana | nucleus | 46.35 | 59.84 |
| GSMUA_Achr9P25550_001 | Banana | nucleus | 46.03 | 59.67 |
| GSMUA_Achr4P21020_001 | Banana | nucleus | 46.35 | 58.87 |
| Solyc06g008590.2.1 | Tomato | nucleus | 38.73 | 58.65 |
| PGSC0003DMT400013627 | Potato | nucleus | 39.68 | 58.41 |
| GSMUA_Achr9P10700_001 | Banana | nucleus | 44.44 | 58.09 |
| CDY10694 | Canola | mitochondrion | 32.06 | 58.05 |
| PGSC0003DMT400041976 | Potato | nucleus | 39.05 | 57.75 |
| KRG92683 | Soybean | nucleus | 41.59 | 57.71 |
| Bra040122.1-P | Field mustard | nucleus | 40.95 | 57.33 |
| VIT_07s0141g00290.t01 | Wine grape | cytosol, nucleus, plastid | 42.86 | 56.72 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 41.59 | 56.71 |
| Solyc06g053830.2.1 | Tomato | nucleus | 39.05 | 56.42 |
| VIT_05s0020g04690.t01 | Wine grape | cytosol, nucleus, plastid | 43.49 | 56.38 |
| KRH67289 | Soybean | nucleus | 45.4 | 56.3 |
| GSMUA_Achr4P22520_001 | Banana | nucleus | 45.08 | 56.13 |
| KRG95616 | Soybean | nucleus | 44.76 | 55.95 |
| AT3G04730.1 | Thale cress | cytosol, nucleus, plastid | 41.9 | 55.93 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 41.9 | 55.93 |
| Bra040398.1-P | Field mustard | nucleus | 40.95 | 55.84 |
| KRH34377 | Soybean | nucleus | 42.22 | 55.65 |
| KRH32099 | Soybean | nucleus | 43.49 | 55.24 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 41.27 | 54.85 |
| KRG96977 | Soybean | nucleus | 40.0 | 54.78 |
| TraesCS5D01G392000.1 | Wheat | nucleus | 40.32 | 54.74 |
| Solyc09g083290.2.1 | Tomato | nucleus | 40.95 | 54.66 |
| KRH68738 | Soybean | nucleus | 41.9 | 54.32 |
| PGSC0003DMT400015610 | Potato | nucleus | 40.63 | 53.78 |
| PGSC0003DMT400050101 | Potato | cytosol, nucleus, plastid | 41.9 | 53.01 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 39.68 | 52.74 |
| Bra001900.1-P | Field mustard | cytosol, nucleus, plastid | 39.68 | 52.74 |
| Solyc01g097290.2.1 | Tomato | nucleus | 41.9 | 52.59 |
| Bra033886.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 40.0 | 52.07 |
| AT1G04250.1 | Thale cress | cytosol, nucleus, plastid | 37.78 | 51.97 |
| Bra039855.1-P | Field mustard | nucleus | 38.41 | 51.93 |
| AT3G23050.1 | Thale cress | cytosol, nucleus, plastid | 40.0 | 51.85 |
| CDX89832 | Canola | nucleus | 36.83 | 51.79 |
| CDY18214 | Canola | nucleus | 36.83 | 51.79 |
| AT4G14550.2 | Thale cress | nucleus | 38.41 | 51.71 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 40.32 | 51.63 |
| CDY47148 | Canola | nucleus | 38.1 | 51.5 |
| Bra015298.1-P | Field mustard | nucleus | 36.51 | 51.34 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 39.05 | 51.25 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 39.05 | 51.25 |
| Bra032520.1-P | Field mustard | nucleus | 36.83 | 51.1 |
| Bra030560.1-P | Field mustard | nucleus | 37.14 | 51.09 |
| KRH34091 | Soybean | cytosol, nucleus, plastid | 37.46 | 51.08 |
| CDY32537 | Canola | nucleus | 36.83 | 50.88 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 36.83 | 50.66 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 36.51 | 50.44 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 37.14 | 50.21 |
| KRH71337 | Soybean | nucleus | 26.98 | 50.0 |
| Zm00001d041416_P001 | Maize | nucleus | 52.38 | 47.97 |
| TraesCS7D01G351400.1 | Wheat | cytosol, nucleus, plastid | 26.98 | 47.22 |
| TraesCS3D01G123400.1 | Wheat | nucleus | 26.03 | 46.59 |
| CDY50750 | Canola | nucleus, plastid | 41.59 | 45.02 |
| TraesCS1D01G119500.1 | Wheat | nucleus | 27.94 | 44.44 |
| TraesCS5D01G069200.1 | Wheat | cytosol | 27.94 | 41.12 |
| KRG92429 | Soybean | cytosol, nucleus, plastid | 43.17 | 41.09 |
| TraesCS5D01G449400.1 | Wheat | nucleus | 23.49 | 40.88 |
| TraesCS5D01G388200.1 | Wheat | nucleus | 27.62 | 40.47 |
| TraesCS7D01G339300.1 | Wheat | nucleus | 30.48 | 40.0 |
| TraesCS3D01G162700.1 | Wheat | cytosol | 28.89 | 38.4 |
| TraesCS1D01G398400.1 | Wheat | nucleus | 30.79 | 36.74 |
| TraesCS3D01G269700.1 | Wheat | nucleus, plastid | 27.62 | 33.59 |
| CDY63072 | Canola | nucleus | 38.1 | 30.15 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF28 | SUPFAM:SSF54277 |
| TMHMM:TMhelix | EnsemblPlantsGene:TraesCS5D01G388300 | EnsemblPlants:TraesCS5D01G388300.2 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5D:+:457775852..457777717
Molecular Weight (calculated)
34262.4 Da
IEP (calculated)
4.614
GRAVY (calculated)
-0.079
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGLGFEETK LRLGLPGGSN EAEEAAAAVR SSGKRGYAET IDLVLKLEPA SAAAPPSEDD EEVADGVAEA QPSPAAADGQ LKRSPSQCSV VTAAQPDADP
101: EKPRAPKAQA VGWPPVRSFR RNMLAATAER GGAALVKVSM DGAPYLRKVD MGTYKSYQEL SKALEKMFSS FTIGNDCSQA QGMTGMNESK LVDLLNGSDY
201: VPTYEDKDGD WMLVGDVPWE MFVASCKRLR IMKGSEAIGL GRCPLNCQIY MCMLDYRLLT PFAFCFFSTK GNGEMQEQEL TVCYQFKIMA LLAQLCTILY
301: CVLLLPMFYL VVIYV
101: EKPRAPKAQA VGWPPVRSFR RNMLAATAER GGAALVKVSM DGAPYLRKVD MGTYKSYQEL SKALEKMFSS FTIGNDCSQA QGMTGMNESK LVDLLNGSDY
201: VPTYEDKDGD WMLVGDVPWE MFVASCKRLR IMKGSEAIGL GRCPLNCQIY MCMLDYRLLT PFAFCFFSTK GNGEMQEQEL TVCYQFKIMA LLAQLCTILY
301: CVLLLPMFYL VVIYV
001: MNLKETELCL GLPGGTETVE SPAKSGVGNK RGFSETVDLK LNLQSNKQGH VDLNTNGAPK EKTFLKDPSK PPAKAQVVGW PPVRNYRKNV MANQKSGEAE
101: EAMSSGGGTV AFVKVSMDGA PYLRKVDLKM YTSYKDLSDA LAKMFSSFTM GSYGAQGMID FMNESKVMDL LNSSEYVPSY EDKDGDWMLV GDVPWPMFVE
201: SCKRLRIMKG SEAIGLGKFS FLFVSISGSF LFFQ
101: EAMSSGGGTV AFVKVSMDGA PYLRKVDLKM YTSYKDLSDA LAKMFSSFTM GSYGAQGMID FMNESKVMDL LNSSEYVPSY EDKDGDWMLV GDVPWPMFVE
201: SCKRLRIMKG SEAIGLGKFS FLFVSISGSF LFFQ
Arabidopsis Description
IAA14indole-3-acetic acid inducible 14 [Source:TAIR;Acc:AT4G14550]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.