Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G446100.1 | Wheat | cytosol, mitochondrion, nucleus | 94.48 | 96.61 |
| HORVU5Hr1G106350.2 | Barley | plastid | 89.5 | 72.0 |
| Os03t0797800-01 | Rice | nucleus | 73.48 | 67.51 |
| Zm00001d013071_P001 | Maize | nucleus | 67.4 | 67.4 |
| EER90734 | Sorghum | cytosol, nucleus, plastid | 69.06 | 67.2 |
| KRH34375 | Soybean | cytosol, nucleus | 37.57 | 55.74 |
| GSMUA_Achr4P05200_001 | Banana | mitochondrion | 38.12 | 55.2 |
| Solyc06g084070.2.1 | Tomato | nucleus, plastid | 43.09 | 50.0 |
| PGSC0003DMT400051896 | Potato | plastid | 41.44 | 49.02 |
| AT4G14560.1 | Thale cress | nucleus | 43.65 | 47.02 |
| Bra001899.1-P | Field mustard | nucleus | 44.2 | 46.78 |
| CDY40837 | Canola | nucleus | 44.2 | 46.78 |
| CDX94876 | Canola | nucleus | 44.2 | 46.78 |
| CDX92972 | Canola | nucleus | 44.2 | 46.78 |
| VIT_07s0141g00270.t01 | Wine grape | nucleus | 48.07 | 46.77 |
| Solyc04g054280.1.1 | Tomato | nucleus | 42.54 | 46.39 |
| VIT_14s0030g02310.t01 | Wine grape | nucleus | 50.83 | 46.23 |
| CDY35493 | Canola | nucleus | 43.65 | 46.2 |
| Bra023771.1-P | Field mustard | nucleus | 43.65 | 46.2 |
| CDY10692 | Canola | nucleus | 43.65 | 45.93 |
| Bra033890.1-P | Field mustard | nucleus | 43.65 | 45.93 |
| CDY53735 | Canola | nucleus | 43.65 | 45.93 |
| CDY10346 | Canola | nucleus | 43.09 | 45.35 |
| CDY36883 | Canola | nucleus | 42.54 | 44.77 |
| Solyc06g053840.2.1 | Tomato | nucleus | 46.96 | 44.74 |
| GSMUA_Achr9P24330_001 | Banana | nucleus | 41.99 | 44.44 |
| Solyc09g065850.2.1 | Tomato | nucleus | 45.3 | 44.32 |
| PGSC0003DMT400049677 | Potato | nucleus | 44.75 | 44.26 |
| Solyc09g083280.2.1 | Tomato | nucleus | 47.51 | 43.88 |
| Bra039732.1-P | Field mustard | nucleus | 41.44 | 43.86 |
| PGSC0003DMT400042074 | Potato | cytosol, nucleus, plastid | 45.86 | 43.68 |
| PGSC0003DMT400015655 | Potato | nucleus | 46.96 | 43.59 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 45.86 | 43.46 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 43.09 | 43.33 |
| Bra032521.1-P | Field mustard | nucleus | 43.09 | 43.33 |
| AT5G43700.1 | Thale cress | cytosol, extracellular, nucleus | 44.2 | 43.01 |
| CDY10069 | Canola | nucleus | 43.65 | 42.93 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 45.3 | 42.93 |
| VIT_05s0020g04680.t01 | Wine grape | nucleus | 39.78 | 42.86 |
| PGSC0003DMT400034978 | Potato | cytosol, mitochondrion, nucleus | 38.67 | 42.68 |
| Solyc06g008580.2.1 | Tomato | nucleus | 44.75 | 42.63 |
| KRH71338 | Soybean | nucleus | 47.51 | 42.57 |
| KRH32098 | Soybean | nucleus | 40.88 | 42.53 |
| GSMUA_Achr11P... | Banana | nucleus | 40.88 | 42.53 |
| Bra027504.1-P | Field mustard | nucleus | 44.75 | 42.41 |
| KRH69048 | Soybean | nucleus | 44.75 | 42.19 |
| PGSC0003DMT400013662 | Potato | cytosol | 44.2 | 42.11 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 43.09 | 41.94 |
| TraesCS5D01G388200.1 | Wheat | nucleus | 49.72 | 41.86 |
| KRG92430 | Soybean | nucleus | 44.75 | 41.75 |
| KRH67288 | Soybean | nucleus | 47.51 | 41.75 |
| TraesCS5D01G069200.1 | Wheat | cytosol | 49.17 | 41.59 |
| Bra015297.1-P | Field mustard | cytosol, nucleus, plastid | 42.54 | 41.4 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 42.54 | 41.4 |
| KRG95613 | Soybean | nucleus | 45.86 | 40.69 |
| Zm00001d034463_P001 | Maize | extracellular, golgi | 69.06 | 39.06 |
| TraesCS7D01G351400.1 | Wheat | cytosol, nucleus, plastid | 37.57 | 37.78 |
| TraesCS3D01G162700.1 | Wheat | cytosol | 44.2 | 33.76 |
| TraesCS1D01G119500.1 | Wheat | nucleus | 36.46 | 33.33 |
| TraesCS3D01G123400.1 | Wheat | nucleus | 32.04 | 32.95 |
| TraesCS7D01G339300.1 | Wheat | nucleus | 43.65 | 32.92 |
| TraesCS5D01G392000.1 | Wheat | nucleus | 41.99 | 32.76 |
| TraesCS5D01G069300.1 | Wheat | nucleus | 41.99 | 30.16 |
| AT3G23030.2 | Thale cress | vacuole | 43.09 | 29.89 |
| TraesCS3D01G269700.1 | Wheat | nucleus, plastid | 42.54 | 29.73 |
| TraesCS1D01G398400.1 | Wheat | nucleus | 41.99 | 28.79 |
| AT1G04240.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 44.2 | 27.68 |
| TraesCS5D01G388300.2 | Wheat | cytosol | 40.88 | 23.49 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF14 | SUPFAM:SSF54277 |
| EnsemblPlantsGene:TraesCS5D01G449400 | EnsemblPlants:TraesCS5D01G449400.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5D:-:498403577..498404789
Molecular Weight (calculated)
18874.1 Da
IEP (calculated)
5.959
GRAVY (calculated)
-0.351
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIIDAELRL GPPGSGGDAA FGSQKKRSSS TVAAAATSEA SGTDDHDAAP ASKVQVVGWP PVGAYRKSTF QSASASAAKE SKGAGEAGQR GGLYVKVSMD
101: GAPYLRKVDL RTYGGYGELR AALDALFGCF SSCSGPSPDN GQFAMAYEDK DGDLMLAGDV PWDMFISSCK RLRIMRSSEA R
101: GAPYLRKVDL RTYGGYGELR AALDALFGCF SSCSGPSPDN GQFAMAYEDK DGDLMLAGDV PWDMFISSCK RLRIMRSSEA R
001: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
Arabidopsis Description
SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.