Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g008580.2.1 | Tomato | nucleus | 92.63 | 92.63 |
| PGSC0003DMT400051896 | Potato | plastid | 54.21 | 67.32 |
| PGSC0003DMT400049677 | Potato | nucleus | 61.58 | 63.93 |
| GSMUA_Achr4P05200_001 | Banana | mitochondrion | 38.42 | 58.4 |
| GSMUA_Achr9P10690_001 | Banana | cytosol, mitochondrion, nucleus | 41.58 | 58.09 |
| GSMUA_Achr5P03110_001 | Banana | nucleus | 50.0 | 56.55 |
| PGSC0003DMT400042074 | Potato | cytosol, nucleus, plastid | 56.32 | 56.32 |
| PGSC0003DMT400015655 | Potato | nucleus | 56.84 | 55.38 |
| VIT_14s0030g02310.t01 | Wine grape | nucleus | 57.89 | 55.28 |
| GSMUA_Achr9P24330_001 | Banana | nucleus | 47.89 | 53.22 |
| PGSC0003DMT400034978 | Potato | cytosol, mitochondrion, nucleus | 45.79 | 53.05 |
| PGSC0003DMT400042572 | Potato | nucleus | 29.47 | 51.85 |
| GSMUA_Achr4P22530_001 | Banana | nucleus | 48.95 | 51.38 |
| GSMUA_Achr8P20620_001 | Banana | nucleus | 49.47 | 50.0 |
| GSMUA_Achr4P21030_001 | Banana | nucleus | 51.58 | 49.49 |
| GSMUA_Achr11P... | Banana | nucleus | 45.26 | 49.43 |
| EER98076 | Sorghum | cytosol, mitochondrion, nucleus | 48.42 | 46.23 |
| GSMUA_Achr2P12630_001 | Banana | nucleus | 48.95 | 45.81 |
| Zm00001d013071_P001 | Maize | nucleus | 43.16 | 45.3 |
| Os12t0601400-01 | Rice | nucleus | 46.84 | 45.18 |
| Zm00001d018973_P001 | Maize | nucleus | 47.37 | 44.55 |
| TraesCS5D01G449400.1 | Wheat | nucleus | 42.11 | 44.2 |
| TraesCS5B01G446100.1 | Wheat | cytosol, mitochondrion, nucleus | 41.05 | 44.07 |
| PGSC0003DMT400013627 | Potato | nucleus | 49.47 | 43.93 |
| PGSC0003DMT400006800 | Potato | mitochondrion | 44.74 | 43.59 |
| EER90734 | Sorghum | cytosol, nucleus, plastid | 42.11 | 43.01 |
| PGSC0003DMT400041976 | Potato | nucleus | 47.89 | 42.72 |
| TraesCS5B01G058800.1 | Wheat | cytosol | 47.89 | 42.52 |
| TraesCS5D01G069200.1 | Wheat | cytosol | 47.89 | 42.52 |
| TraesCS5A01G058700.1 | Wheat | cytosol | 47.89 | 42.52 |
| TraesCS5D01G388200.1 | Wheat | nucleus | 46.84 | 41.4 |
| Os03t0797800-01 | Rice | nucleus | 42.63 | 41.12 |
| TraesCS5B01G381800.1 | Wheat | nucleus | 45.26 | 40.57 |
| PGSC0003DMT400006798 | Potato | nucleus | 45.26 | 40.57 |
| PGSC0003DMT400050101 | Potato | cytosol, nucleus, plastid | 53.16 | 40.56 |
| Os03t0633800-01 | Rice | nucleus | 47.89 | 40.27 |
| TraesCS5A01G378200.1 | Wheat | nucleus | 44.74 | 40.09 |
| Zm00001d041418_P001 | Maize | nucleus | 48.42 | 40.0 |
| PGSC0003DMT400015610 | Potato | nucleus | 48.42 | 38.66 |
| Zm00001d030993_P001 | Maize | nucleus | 40.0 | 38.19 |
| EES16315 | Sorghum | cytosol | 48.95 | 38.11 |
| Zm00001d013707_P001 | Maize | nucleus | 44.74 | 37.95 |
| Os07t0182400-01 | Rice | plastid | 43.68 | 37.9 |
| EER93778 | Sorghum | cytosol, nucleus, plastid | 44.74 | 37.61 |
| Zm00001d033319_P001 | Maize | nucleus | 44.21 | 37.17 |
| PGSC0003DMT400006548 | Potato | plastid | 48.42 | 35.25 |
| HORVU5Hr1G106350.2 | Barley | plastid | 41.58 | 35.11 |
| PGSC0003DMT400001013 | Potato | nucleus | 49.47 | 33.69 |
| HORVU5Hr1G014290.1 | Barley | mitochondrion | 40.0 | 29.69 |
| HORVU5Hr1G093640.1 | Barley | mitochondrion | 47.89 | 28.98 |
| PGSC0003DMT400016356 | Potato | nucleus | 50.53 | 27.51 |
| Zm00001d034463_P001 | Maize | extracellular, golgi | 42.63 | 25.31 |
Protein Annotations
| EntrezGene:102587488 | Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 |
| UniProt:M1A356 | InterPro:PB1_dom | PFAM:PF02309 | EnsemblPlantsGene:PGSC0003DMG400005338 | PGSC:PGSC0003DMG400005338 | EnsemblPlants:PGSC0003DMT400013662 |
| PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF8 | SUPFAM:SSF54277 | UniParc:UPI00029643F1 | RefSeq:XP_006366662.1 |
Description
Nt-iaa4.5 deduced protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005338]
Coordinates
chr6:+:1337450..1338854
Molecular Weight (calculated)
21342.6 Da
IEP (calculated)
8.148
GRAVY (calculated)
-0.436
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MATIYENNDL ATELRLGLPG TTDKPKTQVS STSTNKRSLS EMDSSSNIIN QNDQQDSSPP PKVQIVGWPP VRSYRKNVIV QAKISNIDVS LGMYVKVSMD
101: GAPYLRKIDL RVYKNYQELL KALEFMFKHP IGVYLEKEGY TTSGSDYVLT YEDKDGDWML VGDVPLDMFI NSCKRLRIMK GSDAKGLGCL
101: GAPYLRKIDL RVYKNYQELL KALEFMFKHP IGVYLEKEGY TTSGSDYVLT YEDKDGDWML VGDVPLDMFI NSCKRLRIMK GSDAKGLGCL
001: MGEKESVPTN VPKKMGHTFA SKLLLLLPTS LAFFPLSLIQ KTVSSLSTSI YLYSPLTCIK HSASSKPLIF IISSFSISLL SFKDNNQKLF FLSSPAILEE
101: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
201: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
101: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
201: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
Arabidopsis Description
SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [endoplasmic reticulum,plastid,nucleus,cytosol]
SUBAcon: [endoplasmic reticulum,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.