Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g083280.2.1 | Tomato | nucleus | 99.49 | 98.98 |
| PGSC0003DMT400042074 | Potato | cytosol, nucleus, plastid | 77.95 | 80.0 |
| KRH34375 | Soybean | cytosol, nucleus | 49.23 | 78.69 |
| PGSC0003DMT400034978 | Potato | cytosol, mitochondrion, nucleus | 61.54 | 73.17 |
| AT4G14560.1 | Thale cress | nucleus | 58.97 | 68.45 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 66.67 | 68.06 |
| Bra027504.1-P | Field mustard | nucleus | 66.15 | 67.54 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 65.64 | 67.02 |
| AT5G43700.1 | Thale cress | cytosol, extracellular, nucleus | 63.59 | 66.67 |
| KRH69048 | Soybean | nucleus | 65.13 | 66.15 |
| PGSC0003DMT400049677 | Potato | nucleus | 62.05 | 66.12 |
| CDX94876 | Canola | nucleus | 57.95 | 66.08 |
| CDY36883 | Canola | nucleus | 57.95 | 65.7 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 62.56 | 65.59 |
| Bra015297.1-P | Field mustard | cytosol, nucleus, plastid | 62.56 | 65.59 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 60.51 | 65.56 |
| CDX92972 | Canola | nucleus | 57.44 | 65.5 |
| Bra001899.1-P | Field mustard | nucleus | 57.44 | 65.5 |
| VIT_05s0020g04680.t01 | Wine grape | nucleus | 56.41 | 65.48 |
| CDY10069 | Canola | nucleus | 61.54 | 65.22 |
| CDY40837 | Canola | nucleus | 56.92 | 64.91 |
| CDY10692 | Canola | nucleus | 56.92 | 64.53 |
| Bra032521.1-P | Field mustard | nucleus | 59.49 | 64.44 |
| CDY35493 | Canola | nucleus | 56.41 | 64.33 |
| Bra023771.1-P | Field mustard | nucleus | 56.41 | 64.33 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 61.03 | 63.98 |
| CDY53735 | Canola | nucleus | 56.41 | 63.95 |
| CDY10346 | Canola | nucleus | 56.41 | 63.95 |
| Bra033890.1-P | Field mustard | nucleus | 56.41 | 63.95 |
| PGSC0003DMT400051896 | Potato | plastid | 49.74 | 63.4 |
| KRG92430 | Soybean | nucleus | 62.56 | 62.89 |
| Bra039732.1-P | Field mustard | nucleus | 54.87 | 62.57 |
| GSMUA_Achr5P03110_001 | Banana | nucleus | 53.33 | 61.9 |
| GSMUA_Achr9P10690_001 | Banana | cytosol, mitochondrion, nucleus | 42.56 | 61.03 |
| GSMUA_Achr4P22530_001 | Banana | nucleus | 53.85 | 58.01 |
| GSMUA_Achr4P05200_001 | Banana | mitochondrion | 36.92 | 57.6 |
| PGSC0003DMT400013662 | Potato | cytosol | 55.38 | 56.84 |
| GSMUA_Achr4P21030_001 | Banana | nucleus | 56.41 | 55.56 |
| GSMUA_Achr9P24330_001 | Banana | nucleus | 48.21 | 54.97 |
| GSMUA_Achr11P... | Banana | nucleus | 47.69 | 53.45 |
| GSMUA_Achr8P20620_001 | Banana | nucleus | 50.26 | 52.13 |
| GSMUA_Achr2P12630_001 | Banana | nucleus | 53.33 | 51.23 |
| PGSC0003DMT400042572 | Potato | nucleus | 27.69 | 50.0 |
| EER98076 | Sorghum | cytosol, mitochondrion, nucleus | 50.26 | 49.25 |
| TraesCS5D01G069200.1 | Wheat | cytosol | 53.85 | 49.07 |
| TraesCS5A01G058700.1 | Wheat | cytosol | 53.85 | 49.07 |
| TraesCS5B01G058800.1 | Wheat | cytosol | 53.85 | 49.07 |
| Os12t0601400-01 | Rice | nucleus | 49.23 | 48.73 |
| Zm00001d013071_P001 | Maize | nucleus | 44.1 | 47.51 |
| Zm00001d018973_P001 | Maize | nucleus | 48.72 | 47.03 |
| TraesCS5D01G449400.1 | Wheat | nucleus | 43.59 | 46.96 |
| TraesCS5B01G446100.1 | Wheat | cytosol, mitochondrion, nucleus | 42.56 | 46.89 |
| EER90734 | Sorghum | cytosol, nucleus, plastid | 43.59 | 45.7 |
| PGSC0003DMT400013627 | Potato | nucleus | 48.72 | 44.39 |
| TraesCS5D01G388200.1 | Wheat | nucleus | 48.72 | 44.19 |
| PGSC0003DMT400041976 | Potato | nucleus | 48.21 | 44.13 |
| Zm00001d041418_P001 | Maize | nucleus | 51.79 | 43.91 |
| TraesCS5A01G378200.1 | Wheat | nucleus | 47.18 | 43.4 |
| EER93778 | Sorghum | cytosol, nucleus, plastid | 50.26 | 43.36 |
| Os03t0633800-01 | Rice | nucleus | 49.74 | 42.92 |
| Zm00001d013707_P001 | Maize | nucleus | 49.23 | 42.86 |
| AT1G04240.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 63.08 | 42.56 |
| AT3G23030.2 | Thale cress | vacuole | 56.92 | 42.53 |
| TraesCS5B01G381800.1 | Wheat | nucleus | 46.15 | 42.45 |
| Os03t0797800-01 | Rice | nucleus | 42.56 | 42.13 |
| PGSC0003DMT400006800 | Potato | mitochondrion | 42.05 | 42.05 |
| Zm00001d033319_P001 | Maize | nucleus | 48.72 | 42.04 |
| PGSC0003DMT400015610 | Potato | nucleus | 51.28 | 42.02 |
| EES16315 | Sorghum | cytosol | 52.31 | 41.8 |
| Os07t0182400-01 | Rice | plastid | 46.15 | 41.1 |
| PGSC0003DMT400006798 | Potato | nucleus | 44.62 | 41.04 |
| PGSC0003DMT400050101 | Potato | cytosol, nucleus, plastid | 51.28 | 40.16 |
| Zm00001d030993_P001 | Maize | nucleus | 39.49 | 38.69 |
| HORVU5Hr1G106350.2 | Barley | plastid | 43.08 | 37.33 |
| PGSC0003DMT400006548 | Potato | plastid | 49.74 | 37.16 |
| PGSC0003DMT400001013 | Potato | nucleus | 52.82 | 36.92 |
| HORVU5Hr1G014290.1 | Barley | mitochondrion | 44.62 | 33.98 |
| HORVU5Hr1G093640.1 | Barley | mitochondrion | 50.26 | 31.21 |
| PGSC0003DMT400016356 | Potato | nucleus | 49.74 | 27.79 |
| Zm00001d034463_P001 | Maize | extracellular, golgi | 42.56 | 25.94 |
Protein Annotations
| EntrezGene:102592864 | Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 |
| UniProt:M1A6C6 | InterPro:PB1_dom | PFAM:PF02309 | EnsemblPlantsGene:PGSC0003DMG400006108 | PGSC:PGSC0003DMG400006108 | EnsemblPlants:PGSC0003DMT400015655 |
| PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF11 | SUPFAM:SSF54277 | UniParc:UPI0002961564 | RefSeq:XP_006362194.1 |
| SEG:seg | : | : | : | : | : |
Description
Nt-iaa2.3 deduced protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006108]
Coordinates
chr9:-:55295054..55296824
Molecular Weight (calculated)
21911.1 Da
IEP (calculated)
5.903
GRAVY (calculated)
-0.760
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSIVGNQKD LNFKATELRL GLPGTEDQES DQEISNSKNN NKRALPESTH DEEDCESKSS SDHVKTPPVA KAQIVGWPPV RSNRKNIIQP KKTESESGMY
101: VKVSMDGAPY LRKIDVKMYK CYQELLKALE NMFKLTIGEY SEREGYKGSE FAPAYEDKDG DLMLVGDVPW EMFMSSCKRL RIMKGSEARG LGCGV
101: VKVSMDGAPY LRKIDVKMYK CYQELLKALE NMFKLTIGEY SEREGYKGSE FAPAYEDKDG DLMLVGDVPW EMFMSSCKRL RIMKGSEARG LGCGV
001: MGEKESVPTN VPKKMGHTFA SKLLLLLPTS LAFFPLSLIQ KTVSSLSTSI YLYSPLTCIK HSASSKPLIF IISSFSISLL SFKDNNQKLF FLSSPAILEE
101: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
201: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
101: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
201: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
Arabidopsis Description
SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [cytosol,nucleus,endoplasmic reticulum,plastid]
SUBAcon: [cytosol,nucleus,endoplasmic reticulum,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.