Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032521.1-P | Field mustard | nucleus | 91.85 | 93.89 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 91.3 | 93.33 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 83.15 | 82.26 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 80.98 | 80.11 |
| KRH34375 | Soybean | cytosol, nucleus | 50.54 | 76.23 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 73.37 | 70.68 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 72.28 | 69.63 |
| CDY10692 | Canola | nucleus | 62.5 | 66.86 |
| CDY10346 | Canola | nucleus | 61.96 | 66.28 |
| CDX94876 | Canola | nucleus | 61.41 | 66.08 |
| CDX92972 | Canola | nucleus | 60.87 | 65.5 |
| CDY40837 | Canola | nucleus | 60.33 | 64.91 |
| CDY35493 | Canola | nucleus | 60.33 | 64.91 |
| PGSC0003DMT400042074 | Potato | cytosol, nucleus, plastid | 64.67 | 62.63 |
| Solyc06g053840.2.1 | Tomato | nucleus | 64.67 | 62.63 |
| Solyc09g083280.2.1 | Tomato | nucleus | 65.76 | 61.73 |
| PGSC0003DMT400015655 | Potato | nucleus | 65.22 | 61.54 |
| CDY36883 | Canola | nucleus | 57.07 | 61.05 |
| CDY53735 | Canola | nucleus | 55.98 | 59.88 |
| PGSC0003DMT400034978 | Potato | cytosol, mitochondrion, nucleus | 52.17 | 58.54 |
| GSMUA_Achr4P05200_001 | Banana | mitochondrion | 39.67 | 58.4 |
| KRG92430 | Soybean | nucleus | 61.41 | 58.25 |
| GSMUA_Achr9P10690_001 | Banana | cytosol, mitochondrion, nucleus | 42.93 | 58.09 |
| Solyc04g054280.1.1 | Tomato | nucleus | 52.17 | 57.83 |
| KRH69048 | Soybean | nucleus | 60.33 | 57.81 |
| VIT_05s0020g04680.t01 | Wine grape | nucleus | 52.17 | 57.14 |
| GSMUA_Achr5P03110_001 | Banana | nucleus | 51.63 | 56.55 |
| AT1G04240.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 84.78 | 53.98 |
| GSMUA_Achr9P24330_001 | Banana | nucleus | 50.0 | 53.8 |
| GSMUA_Achr4P22530_001 | Banana | nucleus | 52.72 | 53.59 |
| GSMUA_Achr11P... | Banana | nucleus | 50.0 | 52.87 |
| GSMUA_Achr4P21030_001 | Banana | nucleus | 53.8 | 50.0 |
| GSMUA_Achr8P20620_001 | Banana | nucleus | 50.54 | 49.47 |
| Os12t0601400-01 | Rice | nucleus | 51.09 | 47.72 |
| GSMUA_Achr2P12630_001 | Banana | nucleus | 51.63 | 46.8 |
| EER98076 | Sorghum | cytosol, mitochondrion, nucleus | 50.0 | 46.23 |
| CDY53305 | Canola | cytosol | 39.13 | 45.86 |
| TraesCS5A01G058700.1 | Wheat | cytosol | 52.72 | 45.33 |
| TraesCS5B01G058800.1 | Wheat | cytosol | 52.72 | 45.33 |
| TraesCS5D01G069200.1 | Wheat | cytosol | 52.72 | 45.33 |
| CDY10694 | Canola | mitochondrion | 42.39 | 44.83 |
| Zm00001d013071_P001 | Maize | nucleus | 44.02 | 44.75 |
| Zm00001d018973_P001 | Maize | nucleus | 48.91 | 44.55 |
| TraesCS5D01G449400.1 | Wheat | nucleus | 42.93 | 43.65 |
| TraesCS5B01G446100.1 | Wheat | cytosol, mitochondrion, nucleus | 41.85 | 43.5 |
| CDX82428 | Canola | cytosol, nucleus, plastid | 45.65 | 43.3 |
| CDX75834 | Canola | cytosol, nucleus, plastid | 45.65 | 43.3 |
| EER90734 | Sorghum | cytosol, nucleus, plastid | 43.48 | 43.01 |
| CDY21845 | Canola | cytosol, extracellular, nucleus | 45.65 | 42.64 |
| CDY20135 | Canola | cytosol, nucleus, plastid | 45.65 | 42.64 |
| TraesCS5D01G388200.1 | Wheat | nucleus | 47.83 | 40.93 |
| Zm00001d041418_P001 | Maize | nucleus | 51.09 | 40.87 |
| EER93778 | Sorghum | cytosol, nucleus, plastid | 50.0 | 40.71 |
| CDY71748 | Canola | cytosol, nucleus, plastid | 38.04 | 40.46 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 50.54 | 40.26 |
| CDY40881 | Canola | cytosol | 39.67 | 39.89 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 51.09 | 39.83 |
| Os03t0633800-01 | Rice | nucleus | 48.91 | 39.82 |
| Os07t0182400-01 | Rice | plastid | 47.28 | 39.73 |
| TraesCS5B01G381800.1 | Wheat | nucleus | 45.65 | 39.62 |
| TraesCS5A01G378200.1 | Wheat | nucleus | 45.65 | 39.62 |
| EES16315 | Sorghum | cytosol | 52.17 | 39.34 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 50.54 | 39.24 |
| Zm00001d030993_P001 | Maize | nucleus | 42.39 | 39.2 |
| Os03t0797800-01 | Rice | nucleus | 41.85 | 39.09 |
| Zm00001d033319_P001 | Maize | nucleus | 47.83 | 38.94 |
| CDY18214 | Canola | nucleus | 47.28 | 38.84 |
| CDX89832 | Canola | nucleus | 47.28 | 38.84 |
| Zm00001d013707_P001 | Maize | nucleus | 47.28 | 38.84 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 50.0 | 38.82 |
| CDY26042 | Canola | nucleus | 41.3 | 38.78 |
| CDY68807 | Canola | nucleus | 41.3 | 38.78 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 51.63 | 38.62 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 47.83 | 38.43 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 50.0 | 38.33 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 50.0 | 38.33 |
| CDY47148 | Canola | nucleus | 48.37 | 38.2 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 47.28 | 38.16 |
| CDY32537 | Canola | nucleus | 47.28 | 38.16 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 47.83 | 37.77 |
| CDY06836 | Canola | nucleus | 48.91 | 35.71 |
| CDY53800 | Canola | nucleus | 36.41 | 35.64 |
| HORVU5Hr1G106350.2 | Barley | plastid | 42.93 | 35.11 |
| CDY50113 | Canola | cytosol, nucleus, plastid | 33.7 | 34.25 |
| CDY25617 | Canola | nucleus | 48.91 | 33.83 |
| CDX89499 | Canola | nucleus | 48.37 | 32.84 |
| CDY50750 | Canola | nucleus, plastid | 51.09 | 32.3 |
| HORVU5Hr1G014290.1 | Barley | mitochondrion | 44.57 | 32.03 |
| CDY37837 | Canola | mitochondrion | 47.83 | 29.73 |
| CDY68170 | Canola | nucleus, plastid | 50.0 | 29.58 |
| CDY18679 | Canola | plastid | 50.0 | 29.49 |
| HORVU5Hr1G093640.1 | Barley | mitochondrion | 49.46 | 28.98 |
| CDY66936 | Canola | cytosol, nucleus, plastid | 41.85 | 27.9 |
| CDY45607 | Canola | cytosol, nucleus, plastid | 48.91 | 27.36 |
| CDY08767 | Canola | cytosol, nucleus, plastid | 48.91 | 27.11 |
| Zm00001d034463_P001 | Maize | extracellular, golgi | 42.93 | 24.69 |
| CDY63072 | Canola | nucleus | 46.74 | 21.61 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078FAL3 | UniProt:A0A078FAL3 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY10069 | ProteinID:CDY10069 | ProteinID:CDY10069.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00031866001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF11 | SUPFAM:SSF54277 | UniParc:UPI0004EE500F |
Description
BnaC08g43820DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAL3]
Coordinates
chrLK032000:+:808583..809641
Molecular Weight (calculated)
20808.7 Da
IEP (calculated)
5.452
GRAVY (calculated)
-0.661
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEFVNLKAT ELRLGLPGTD NVCEQRVSCN SNSNKRALQA DAENEIESST MKTPPRKAQI VGWPPVRSYR KNSIQTKKNE SDGESQGIYV KVSMDGAPYL
101: RKIDLSCYKG YSDLLKALEL MFKFSVGEYS ERDGYRGSDF VPTYEDKDGD WMLIGDVPWE MFECNCKRLR IMKGSEARCL GSGV
101: RKIDLSCYKG YSDLLKALEL MFKFSVGEYS ERDGYRGSDF VPTYEDKDGD WMLIGDVPWE MFECNCKRLR IMKGSEARCL GSGV
001: MGEKESVPTN VPKKMGHTFA SKLLLLLPTS LAFFPLSLIQ KTVSSLSTSI YLYSPLTCIK HSASSKPLIF IISSFSISLL SFKDNNQKLF FLSSPAILEE
101: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
201: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
101: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
201: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
Arabidopsis Description
SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [endoplasmic reticulum,plastid,nucleus,cytosol]
SUBAcon: [endoplasmic reticulum,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.