Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89832 | Canola | nucleus | 97.32 | 97.32 |
| Bra015298.1-P | Field mustard | nucleus | 96.88 | 96.88 |
| CDY32537 | Canola | nucleus | 88.39 | 86.84 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 87.05 | 85.15 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 85.71 | 84.21 |
| AT1G04250.1 | Thale cress | cytosol, nucleus, plastid | 85.27 | 83.41 |
| KRH34377 | Soybean | nucleus | 69.2 | 64.85 |
| CDY47148 | Canola | nucleus | 66.96 | 64.38 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 66.52 | 63.95 |
| CDY10694 | Canola | mitochondrion | 49.55 | 63.79 |
| Solyc09g083290.2.1 | Tomato | nucleus | 66.52 | 63.14 |
| VIT_05s0020g04690.t01 | Wine grape | cytosol, nucleus, plastid | 67.86 | 62.55 |
| PGSC0003DMT400015610 | Potato | nucleus | 66.07 | 62.18 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 65.18 | 61.6 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 65.18 | 60.83 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 65.18 | 60.83 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 64.73 | 58.94 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 60.71 | 58.87 |
| GSMUA_Achr10P... | Banana | nucleus | 62.95 | 58.51 |
| GSMUA_Achr9P25550_001 | Banana | nucleus | 63.39 | 58.44 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 60.27 | 57.2 |
| GSMUA_Achr8P20610_001 | Banana | nucleus | 61.61 | 56.56 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 59.38 | 56.12 |
| GSMUA_Achr4P21020_001 | Banana | nucleus | 61.61 | 55.65 |
| CDX92972 | Canola | nucleus | 41.07 | 53.8 |
| CDX94876 | Canola | nucleus | 41.07 | 53.8 |
| GSMUA_Achr9P10700_001 | Banana | nucleus | 57.59 | 53.53 |
| CDY10692 | Canola | nucleus | 41.07 | 53.49 |
| CDY35493 | Canola | nucleus | 40.62 | 53.22 |
| CDY40837 | Canola | nucleus | 40.62 | 53.22 |
| CDY10346 | Canola | nucleus | 40.62 | 52.91 |
| TraesCS5D01G069300.1 | Wheat | nucleus | 58.04 | 51.59 |
| TraesCS5B01G058500.1 | Wheat | nucleus | 58.04 | 51.59 |
| TraesCS5A01G058600.1 | Wheat | nucleus | 58.04 | 51.38 |
| Os03t0742900-01 | Rice | vacuole | 53.57 | 50.85 |
| Os03t0633500-01 | Rice | cytosol | 52.68 | 50.64 |
| EER90896 | Sorghum | nucleus | 53.12 | 50.64 |
| Zm00001d033976_P002 | Maize | nucleus | 53.57 | 50.63 |
| CDY36883 | Canola | nucleus | 38.84 | 50.58 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 41.96 | 50.54 |
| TraesCS5D01G392000.1 | Wheat | nucleus | 51.79 | 50.0 |
| CDY53735 | Canola | nucleus | 38.39 | 50.0 |
| TraesCS5A01G382600.1 | Wheat | nucleus | 51.79 | 49.79 |
| TraesCS5B01G386800.1 | Wheat | nucleus | 51.79 | 49.57 |
| Zm00001d013302_P002 | Maize | nucleus | 50.45 | 49.56 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 41.96 | 49.21 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 41.96 | 49.21 |
| GSMUA_Achr4P22520_001 | Banana | nucleus | 55.36 | 49.01 |
| HORVU5Hr1G094220.1 | Barley | nucleus | 51.79 | 48.95 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 40.62 | 48.92 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 39.29 | 48.89 |
| CDY63072 | Canola | nucleus | 86.61 | 48.74 |
| CDY40881 | Canola | cytosol | 39.73 | 48.63 |
| EES17334 | Sorghum | cytosol | 60.27 | 48.04 |
| CDY53305 | Canola | cytosol | 33.48 | 47.77 |
| Os12t0601300-01 | Rice | nucleus | 58.93 | 47.65 |
| TraesCS5B01G381900.1 | Wheat | cytosol, mitochondrion, nucleus | 53.57 | 47.43 |
| CDX75834 | Canola | cytosol, nucleus, plastid | 41.07 | 47.42 |
| CDY10069 | Canola | nucleus | 38.84 | 47.28 |
| KRG92429 | Soybean | cytosol, nucleus, plastid | 69.64 | 47.13 |
| HORVU5Hr1G014300.4 | Barley | nucleus | 58.04 | 47.1 |
| CDY50750 | Canola | nucleus, plastid | 61.16 | 47.08 |
| CDX82428 | Canola | cytosol, nucleus, plastid | 40.62 | 46.91 |
| OQU91311 | Sorghum | cytosol, mitochondrion, nucleus | 54.91 | 46.59 |
| CDY50113 | Canola | cytosol, nucleus, plastid | 37.5 | 46.41 |
| CDY21845 | Canola | cytosol, extracellular, nucleus | 39.29 | 44.67 |
| CDY20135 | Canola | cytosol, nucleus, plastid | 39.29 | 44.67 |
| CDY71748 | Canola | cytosol, nucleus, plastid | 32.59 | 42.2 |
| CDY06836 | Canola | nucleus | 47.32 | 42.06 |
| CDY26042 | Canola | nucleus | 35.71 | 40.82 |
| CDY68807 | Canola | nucleus | 35.71 | 40.82 |
| HORVU5Hr1G093580.2 | Barley | cytosol, nucleus, peroxisome | 50.45 | 40.21 |
| CDY25617 | Canola | nucleus | 45.98 | 38.72 |
| CDX89499 | Canola | nucleus | 45.09 | 37.27 |
| CDY53800 | Canola | nucleus | 31.25 | 37.23 |
| CDY37837 | Canola | mitochondrion | 49.11 | 37.16 |
| TraesCS5D01G388300.2 | Wheat | cytosol | 51.79 | 36.83 |
| CDY68170 | Canola | nucleus, plastid | 50.89 | 36.66 |
| Zm00001d041416_P001 | Maize | nucleus | 56.25 | 36.63 |
| TraesCS5A01G378300.2 | Wheat | cytosol, mitochondrion, nucleus | 49.55 | 36.39 |
| CDY18679 | Canola | plastid | 49.55 | 35.58 |
| CDY45607 | Canola | cytosol, nucleus, plastid | 49.55 | 33.74 |
| CDY08767 | Canola | cytosol, nucleus, plastid | 50.0 | 33.73 |
| CDY66936 | Canola | cytosol, nucleus, plastid | 40.62 | 32.97 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078FYI3 | UniProt:A0A078FYI3 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY18214 | ProteinID:CDY18214 | ProteinID:CDY18214.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00002743001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF28 | SUPFAM:SSF54277 | UniParc:UPI0004EE981F |
Description
BnaC05g02370DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYI3]
Coordinates
chrLK032083:+:365101..366825
Molecular Weight (calculated)
25125.2 Da
IEP (calculated)
7.094
GRAVY (calculated)
-0.575
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MMDNIDLNLQ ETELCLGLPG GMTGTKRGFS ETVDLKLNLN NEPESKEVSK THDVVISVSK QKNKCPKDPT KPPAKAQVVG WPPVRSYRKN VMGSCQKSND
101: VTETAVFVKV SMDGAPYLRK VDLKMYKSYD ELSNALSNMF GSFTMGKNGG EEGMIDFMNE REVRDLVNSW DYVPSYEDKD GDWMLVGDVP WPMFVDTCKR
201: LRLMKGSDAI GLAPRAMEKC KSRT
101: VTETAVFVKV SMDGAPYLRK VDLKMYKSYD ELSNALSNMF GSFTMGKNGG EEGMIDFMNE REVRDLVNSW DYVPSYEDKD GDWMLVGDVP WPMFVDTCKR
201: LRLMKGSDAI GLAPRAMEKC KSRT
001: MMGSVELNLR ETELCLGLPG GDTVAPVTGN KRGFSETVDL KLNLNNEPAN KEGSTTHDVV TFDSKEKSAC PKDPAKPPAK AQVVGWPPVR SYRKNVMVSC
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
Arabidopsis Description
IAA17Auxin-responsive protein IAA17 [Source:UniProtKB/Swiss-Prot;Acc:P93830]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.