Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0081g00010.t01 | Wine grape | nucleus, plastid | 45.49 | 62.35 |
| TraesCS5B01G381900.1 | Wheat | cytosol, mitochondrion, nucleus | 66.95 | 61.66 |
| GSMUA_Achr10P... | Banana | nucleus | 62.23 | 60.17 |
| GSMUA_Achr8P20610_001 | Banana | nucleus | 62.23 | 59.43 |
| OQU91311 | Sorghum | cytosol, mitochondrion, nucleus | 66.52 | 58.71 |
| GSMUA_Achr9P25550_001 | Banana | nucleus | 60.52 | 58.02 |
| HORVU5Hr1G093580.2 | Barley | cytosol, nucleus, peroxisome | 68.67 | 56.94 |
| GSMUA_Achr4P21020_001 | Banana | nucleus | 60.09 | 56.45 |
| Solyc06g008590.2.1 | Tomato | nucleus | 50.21 | 56.25 |
| Solyc09g083290.2.1 | Tomato | nucleus | 56.65 | 55.93 |
| CDY10694 | Canola | mitochondrion | 41.63 | 55.75 |
| GSMUA_Achr9P10700_001 | Banana | nucleus | 57.51 | 55.6 |
| Os12t0601300-01 | Rice | nucleus | 66.09 | 55.6 |
| GSMUA_Achr4P22520_001 | Banana | nucleus | 60.09 | 55.34 |
| PGSC0003DMT400013627 | Potato | nucleus | 50.64 | 55.14 |
| PGSC0003DMT400015610 | Potato | nucleus | 56.22 | 55.04 |
| KRH32099 | Soybean | nucleus | 58.37 | 54.84 |
| VIT_05s0020g04690.t01 | Wine grape | cytosol, nucleus, plastid | 57.08 | 54.73 |
| KRG92683 | Soybean | nucleus | 52.79 | 54.19 |
| KRH34377 | Soybean | nucleus | 55.36 | 53.97 |
| VIT_07s0141g00290.t01 | Wine grape | cytosol, nucleus, plastid | 54.94 | 53.78 |
| Bra040122.1-P | Field mustard | nucleus | 51.93 | 53.78 |
| AT1G04250.1 | Thale cress | cytosol, nucleus, plastid | 52.79 | 53.71 |
| Solyc06g053830.2.1 | Tomato | nucleus | 50.21 | 53.67 |
| PGSC0003DMT400041976 | Potato | nucleus | 48.93 | 53.52 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 51.93 | 52.84 |
| Bra030560.1-P | Field mustard | nucleus | 51.93 | 52.84 |
| CDY18214 | Canola | nucleus | 50.64 | 52.68 |
| AT3G04730.1 | Thale cress | cytosol, nucleus, plastid | 53.22 | 52.54 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 53.22 | 52.54 |
| Bra032520.1-P | Field mustard | nucleus | 51.07 | 52.42 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 51.93 | 52.38 |
| CDX89832 | Canola | nucleus | 50.21 | 52.23 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 51.07 | 52.19 |
| CDY32537 | Canola | nucleus | 51.07 | 52.19 |
| KRH67289 | Soybean | nucleus | 56.65 | 51.97 |
| Bra040398.1-P | Field mustard | nucleus | 51.5 | 51.95 |
| Bra015298.1-P | Field mustard | nucleus | 49.79 | 51.79 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 52.36 | 51.48 |
| AT4G14550.2 | Thale cress | nucleus | 51.5 | 51.28 |
| KRG95616 | Soybean | nucleus | 55.36 | 51.19 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 51.93 | 51.05 |
| Bra001900.1-P | Field mustard | cytosol, nucleus, plastid | 51.93 | 51.05 |
| KRH68738 | Soybean | nucleus | 52.79 | 50.62 |
| KRG96977 | Soybean | nucleus | 49.79 | 50.43 |
| Os03t0742900-01 | Rice | vacuole | 51.07 | 50.42 |
| Bra033886.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 52.36 | 50.41 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 50.21 | 50.21 |
| PGSC0003DMT400050101 | Potato | cytosol, nucleus, plastid | 53.65 | 50.2 |
| Solyc01g097290.2.1 | Tomato | nucleus | 53.65 | 49.8 |
| AT3G23050.1 | Thale cress | cytosol, nucleus, plastid | 51.93 | 49.79 |
| Bra039855.1-P | Field mustard | nucleus | 49.79 | 49.79 |
| TraesCS5D01G388300.2 | Wheat | cytosol | 66.95 | 49.52 |
| TraesCS5A01G378300.2 | Wheat | cytosol, mitochondrion, nucleus | 64.81 | 49.51 |
| KRH71337 | Soybean | nucleus | 36.05 | 49.41 |
| CDY47148 | Canola | nucleus | 49.36 | 49.36 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 51.07 | 48.37 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 49.79 | 48.33 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 49.79 | 48.33 |
| Os01t0178500-02 | Rice | nucleus | 40.34 | 47.24 |
| KRH34091 | Soybean | cytosol, nucleus, plastid | 46.35 | 46.75 |
| Zm00001d041416_P001 | Maize | nucleus | 63.09 | 42.73 |
| Os05t0178600-01 | Rice | nucleus | 38.63 | 42.45 |
| Os12t0601400-01 | Rice | nucleus | 35.62 | 42.13 |
| CDY50750 | Canola | nucleus, plastid | 51.93 | 41.58 |
| Os05t0230700-01 | Rice | nucleus | 44.21 | 40.08 |
| KRG92429 | Soybean | cytosol, nucleus, plastid | 55.79 | 39.27 |
| Os03t0797800-01 | Rice | nucleus | 31.33 | 37.06 |
| Os06t0335500-01 | Rice | nucleus | 42.06 | 36.84 |
| Os03t0633800-01 | Rice | nucleus | 35.62 | 36.73 |
| Os01t0231000-01 | Rice | nucleus | 40.77 | 36.12 |
| Os05t0559400-01 | Rice | nucleus | 42.06 | 34.88 |
| Os01t0675700-01 | Rice | nucleus | 39.48 | 33.95 |
| Os07t0182400-01 | Rice | plastid | 31.33 | 33.33 |
| CDY63072 | Canola | nucleus | 51.07 | 29.9 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | EntrezGene:4333511 | ProteinID:AAS07281.1 | ProteinID:AAU89153.1 | ProteinID:ABF97770.1 |
| InterPro:AUX/IAA_dom | InterPro:AUX_IAA | ProteinID:BAF12627.2 | ProteinID:BAS85383.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 |
| EnsemblPlantsGene:Os03g0633500 | EnsemblPlants:Os03t0633500-01 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 |
| PANTHER:PTHR31734:SF28 | UniProt:Q75GK0 | SUPFAM:SSF54277 | UniParc:UPI000023957B | RefSeq:XP_015628434.1 | SEG:seg |
Description
IAA11A member of Aux/IAA family protein, Regulation of lateral root initiation (Os03t0633500-01)
Coordinates
chr3:-:24198649..24202021
Molecular Weight (calculated)
25310.3 Da
IEP (calculated)
6.089
GRAVY (calculated)
-0.426
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGLGFDETE LRLGLPGAGE LAARSSGKRG FAETIDLKLK LQPAAPAAVS GEEGAQEDKE DADAAAAAAD EKMSMKRSAS QSSVVTAEPD PDKPRAPKAQ
101: VVGWPPVRSF RKNVLAEKCK AAALVKVSMD GAPYLRKIDV AMYKSYPELS MAFQNMFTSF TIGKCGSHQQ LKESNKLRDD LEYVPTYEDK DGDWMLVGDV
201: PWEMFVESCK RLRIMKGSEA IGLAPRAVEK CKS
101: VVGWPPVRSF RKNVLAEKCK AAALVKVSMD GAPYLRKIDV AMYKSYPELS MAFQNMFTSF TIGKCGSHQQ LKESNKLRDD LEYVPTYEDK DGDWMLVGDV
201: PWEMFVESCK RLRIMKGSEA IGLAPRAVEK CKS
001: MMGSVELNLR ETELCLGLPG GDTVAPVTGN KRGFSETVDL KLNLNNEPAN KEGSTTHDVV TFDSKEKSAC PKDPAKPPAK AQVVGWPPVR SYRKNVMVSC
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA
Arabidopsis Description
IAA17Auxin-responsive protein IAA17 [Source:UniProtKB/Swiss-Prot;Acc:P93830]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.