Factsheet for Os10t0479900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0190300-01
Os01t0236300-01
Os01t0286900-01
Os01t0741900-01
Os02t0228900-01
Os02t0628600-01
Os02t0723400-02
Os04t0519700-01
Os04t0664400-01
Os05t0523300-01
Os06t0685700-01
Os10t0479900-01
Os12t0274700-01
Os12t0291100-01
Os12t0291200-00
Os12t0291400-01
Os12t0292400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28350.1	Os04t0664400-01	AT1G19850.1	22096563
AT2G28350.1	Os01t0236300-01	AT1G34310.1	22096563
AT2G28350.1	Os02t0628600-01	AT2G28350.1	22096563
AT2G28350.1	Os04t0519700-01	AT2G28350.1	22096563
AT2G28350.1	Os06t0685700-01	AT2G28350.1	22096563
AT2G28350.1	Os10t0479900-01	AT2G28350.1	22096563
AT2G28350.1	Os01t0190300-01	AT3G16500.1	21734647
AT2G28350.1	Os01t0741900-01	AT3G16500.1	21734647
AT2G28350.1	Os02t0228900-01	AT3G16500.1	21734647
AT2G28350.1	Os05t0523300-01	AT3G16500.1	21734647
AT2G28350.1	Os01t0236300-01	AT3G61830.1	22096563
AT2G28350.1	Os01t0190300-01	AT5G25890.1	22096563
AT2G28350.1	Os01t0741900-01	AT5G25890.1	22096563
AT2G28350.1	Os02t0228900-01	AT5G25890.1	22096563
AT2G28350.1	Os05t0523300-01	AT5G25890.1	22096563
AT4G30080.1	Os01t0286900-01	AT3G17600.1	21798944
AT4G30080.1	Os02t0723400-02	AT3G17600.1	21798944
AT4G30080.1	Os12t0274700-01	AT5G38420.1	21798944
AT4G30080.1	Os12t0291100-01	AT5G38420.1	21798944
AT4G30080.1	Os12t0291200-00	AT5G38420.1	21798944
AT4G30080.1	Os12t0291400-01	AT5G38420.1	21798944
AT4G30080.1	Os12t0292400-01	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G156600.1	Wheat	nucleus	82.38	83.58
TraesCS1D01G155100.1	Wheat	nucleus	81.81	82.99
HORVU1Hr1G041770.1	Barley	nucleus	81.52	82.7
TraesCS1B01G173700.1	Wheat	nucleus	81.81	82.63
EER94066	Sorghum	nucleus	80.23	81.28
Zm00001d014013_P002	Maize	nucleus	73.35	79.5
Zm00001d032683_P001	Maize	nucleus	76.5	78.41
GSMUA_Achr4P18240_001	Banana	nucleus	59.31	68.2
GSMUA_Achr8P18930_001	Banana	nucleus	54.73	66.67
GSMUA_Achr5P18540_001	Banana	nucleus	49.14	66.09
GSMUA_Achr11P...	Banana	nucleus	51.0	65.8
GSMUA_Achr11P...	Banana	nucleus	56.59	65.4
GSMUA_Achr5P03960_001	Banana	nucleus	52.29	65.3
GSMUA_Achr5P14630_001	Banana	nucleus	51.0	64.61
VIT_06s0004g02750.t01	Wine grape	nucleus	62.61	61.46
VIT_13s0019g04380.t01	Wine grape	nucleus	59.6	61.27
PGSC0003DMT400055522	Potato	nucleus	60.17	60.69
Solyc09g007810.2.1	Tomato	nucleus	60.32	60.66
VIT_08s0040g01810.t01	Wine grape	nucleus	53.44	59.87
Os06t0685700-01	Rice	nucleus	59.89	59.71
Solyc11g069500.1.1	Tomato	nucleus	59.46	59.37
PGSC0003DMT400020874	Potato	nucleus	58.74	58.66
KRH25023	Soybean	nucleus	58.74	58.49
KRH29907	Soybean	nucleus	58.02	58.11
CDX68620	Canola	nucleus	51.0	57.7
Os02t0628600-01	Rice	nucleus	56.02	57.42
KRH32480	Soybean	nucleus	57.45	57.29
CDY43553	Canola	nucleus	50.14	57.28
KRH22880	Soybean	nucleus	54.58	56.87
KRH26435	Soybean	nucleus	56.59	56.43
Bra011162.1-P	Field mustard	nucleus	51.72	55.8
KRG95987	Soybean	nucleus	55.73	55.57
AT4G30080.1	Thale cress	nucleus	53.15	55.37
CDY15734	Canola	nucleus	53.87	55.29
KRH34867	Soybean	nucleus	48.14	54.9
Os04t0519700-01	Rice	nucleus	30.8	54.85
CDY04557	Canola	nucleus	53.72	54.74
AT2G28350.1	Thale cress	nucleus	54.3	54.69
KRG91907	Soybean	nucleus	46.28	54.47
PGSC0003DMT400062489	Potato	nucleus	52.72	54.44
Solyc06g075150.2.1	Tomato	nucleus	52.29	54.4
Bra011955.1-P	Field mustard	nucleus	54.44	53.9
Bra024109.1-P	Field mustard	nucleus	48.71	48.99
Solyc10g086130.1.1	Tomato	nucleus	42.98	47.54
CDY46728	Canola	nucleus	52.01	43.01
CDY30172	Canola	nucleus	49.0	41.2
Os04t0690600-01	Rice	plastid	24.21	31.95
Os05t0563400-01	Rice	nucleus	26.5	25.98
Os01t0670800-02	Rice	nucleus	26.5	25.77
Os05t0515400-01	Rice	nucleus	22.21	24.92
Os01t0753500-01	Rice	plastid	26.07	24.9
Os07t0183700-00	Rice	mitochondrion	11.46	15.27
Os07t0183350-00	Rice	extracellular	14.18	12.99
Os07t0183100-00	Rice	nucleus	5.73	11.17
Os07t0183200-01	Rice	nucleus	1.29	2.21

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:4348918	ProteinID:AAK21342.1
ProteinID:AAP54297.2	EMBL:AK318617	InterPro:Auxin_resp	InterPro:B3_DNA-bd	ProteinID:BAF26786.2	ProteinID:BAT11328.1
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340
InterPro:IPR015300	EnsemblPlantsGene:Os10g0479900	EnsemblPlants:Os10t0479900-01	InterPro:PB1_dom	PFAM:PF02362	PFAM:PF06507
PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF36	UniProt:Q9AV47	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI00000A5573	RefSeq:XP_015614842.1	SEG:seg	:	:

Description

AUXIN RESPONSE FACTOR 22Transcriptional factor B3 family protein. (Os10t0479900-01)

Coordinates

chr10:+:18051857..18056890

Molecular Weight (calculated)

75614.1 Da

IEP (calculated)

6.942

GRAVY (calculated)

-0.257

Length

698 amino acids

Sequence
(BLAST)

001: MKEVGEVEEV RCLDPQLWHA CAGGMVQMPA PRSRVYYFAQ GHAEHADGGG GAAAAAAELG PRALPPLVLC RVEGVQFLAD RDSDEVYAKI RLAPVAPGEA
101: EFREPDELCP LGAAGDAAEP SPEKPTSFAK TLTQSDANNG GGFSVPRYCA ETIFPKLDYR ADPPVQTVLA KDVHGVVWKF RHIYRGTPRR HLLTTGWSTF
201: VNQKKLVAGD SIVFLRTRHG ELCVGIRRAK RMACGGMECM SGWNAPGYGG GGFSAFLKEE ESKLMKGHGG GGYMKGKGKV RMADVVEAAS LASSGQPFEV
301: AYYPRASTPD FVVKAASVQA AMRIQWCSGM RFKMAFETED SSRISWFMGT ISSVQVADPN RWPNSPWRLL QVTWDEPDLL QNVKCVSPWL VELVSSIPPI
401: HLGPFSSPRK KLRVPPHPDF PFEGHLLNPI FHGNPLGPSN SPLCCYPDTA PAGIQGARHA QFGLPLTDHQ LNKLHLGLLH SGSFNRLDAI TPPSRISKGF
501: VVSSAPAHDN ISCLLSISTP QVAEKSDDRK TTPHIMLFGK AIFTEQQITS SGSTETLSPG VTGNSSPNGN AHKTGNASDG SGSSICIGFS SQGHEASDLG
601: LEAGHCKVFM ESEDVGRTID LSVFGSYEEL YGRLADMFGI EKEEIINHLH FRDAAGVVKH PGEVPFSDFM KAARRLTIIA GDRERIERPL IECLVEQA

Best Arabidopsis Sequence Match ( AT4G30080.1 )
(BLAST)

001: MINVMNPMKG GTEKGLDPQL WHACAGGMVR MPPMNSKVFY FPQGHAENAY DCVDFGNLPI PPMVLCRVLA IKYMADAESD EVFAKLRLIP LKDDEYVDHE
101: YGDGEDSNGF ESNSEKTPSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YNAEPPVQTI LAKDVHGDVW KFRHIYRGTP RRHLLTTGWS NFVNQKKLVA
201: GDSIVFMRAE NGDLCVGIRR AKRGGIGNGP EYSAGWNPIG GSCGYSSLLR EDESNSLRRS NCSLADRKGK VTAESVIEAA TLAISGRPFE VVYYPRASTS
301: EFCVKALDAR AAMRIPWCSG MRFKMAFETE DSSRISWFMG TVSAVNVSDP IRWPNSPWRL LQVAWDEPDL LQNVKRVNPW LVELVSNVHP IPLTSFSPPR
401: KKMRLPQHPD YNNLINSIPV PSFPSNPLIR SSPLSSVLDN VPVGLQGARH NAHQYYGLSS SDLHHYYLNR PPPPPPPSSL QLSPSLGLRN IDTKNEKGFC
501: FLTMGTTPCN DTKSKKSHIV LFGKLILPEE QLSEKGSTDT ANIEKTQISS GGSNQNGVAG REFSSSDEGS PCSKKVHDAS GLETGHCKVF MESDDVGRTL
601: DLSVLGSYEE LSRKLSDMFG IKKSEMLSSV LYRDASGAIK YAGNEPFSEF LKTARRLTIL TEQGSESVVV

Arabidopsis Description

ARF16Auxin response factor 16 [Source:UniProtKB/Swiss-Prot;Acc:Q93YR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.