Factsheet for Os12t0291400-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0621300-01
Os01t0915400-00
Os01t0948900-01
Os02t0258300-01
Os02t0489550-00
Os02t0708400-01
Os03t0673000-00
Os03t0673500-00
Os03t0727000-02
Os03t0727200-00
Os03t0771500-01
Os03t0772100-00
Os04t0627000-02
Os05t0586400-01
Os06t0524300-01
Os07t0129700-01
Os08t0136100-01
Os08t0187500-01
Os08t0428400-01
Os08t0520900-00
Os10t0362300-03
Os11t0141900-00
Os12t0138500-01
Os12t0538300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67090.1	Os10t0362300-03	AT5G35750.1	18642946
AT5G38420.1	Os01t0621300-01	AT1G01440.1	21798944
AT5G38420.1	Os02t0258300-01	AT1G01440.1	21798944
AT5G38420.1	Os05t0586400-01	AT1G01440.1	21798944
AT5G38420.1	Os06t0524300-01	AT1G01440.1	21798944
AT5G38420.1	Os01t0948900-01	AT2G41370.1	21798944
AT5G38420.1	Os11t0141900-00	AT2G41370.1	21798944
AT5G38420.1	Os12t0138500-01	AT2G41370.1	21798944
AT5G38420.1	Os01t0915400-00	AT3G04240.1	21798944
AT5G38420.1	Os02t0489550-00	AT3G04240.1	21798944
AT5G38420.1	Os08t0428400-01	AT3G17860.1	21798944
AT5G38420.1	Os02t0708400-01	AT3G27960.1	21798944
AT5G38420.1	Os04t0627000-02	AT4G04890.1	21798944
AT5G38420.1	Os08t0136100-01	AT4G04890.1	21798944
AT5G38420.1	Os08t0187500-01	AT4G04890.1	21798944
AT5G38420.1	Os03t0673000-00	AT4G08150.1	21798944
AT5G38420.1	Os03t0673500-00	AT4G08150.1	21798944
AT5G38420.1	Os03t0727000-02	AT4G08150.1	21798944
AT5G38420.1	Os03t0727200-00	AT4G08150.1	21798944
AT5G38420.1	Os03t0771500-01	AT4G08150.1	21798944
AT5G38420.1	Os03t0772100-00	AT4G08150.1	21798944
AT5G38420.1	Os07t0129700-01	AT4G08150.1	21798944
AT5G38420.1	Os12t0538300-01	AT5G11980.1	21798944
AT5G38430.1	Os08t0520900-00	AT2G39930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0291100-01	Rice	plastid	96.57	96.57
Os12t0292400-01	Rice	extracellular	95.43	95.43
Os12t0274700-01	Rice	plastid	93.71	93.71
TraesCS2D01G065200.1	Wheat	plastid	85.71	85.71
HORVU5Hr1G038630.1	Barley	plastid	85.71	85.71
HORVU5Hr1G051010.2	Barley	plastid	85.71	85.71
HORVU5Hr1G033540.2	Barley	plastid	85.14	85.14
TraesCS2B01G079200.1	Wheat	plastid	85.14	85.14
TraesCS5D01G169900.2	Wheat	plastid	85.14	85.14
TraesCS5D01G169600.2	Wheat	plastid	85.14	85.14
TraesCS5B01G162800.1	Wheat	plastid	85.14	85.14
TraesCS5B01G162600.1	Wheat	plastid	85.14	85.14
TraesCS5A01G165700.1	Wheat	plastid	85.14	85.14
TraesCS5A01G165400.2	Wheat	plastid	85.14	85.14
HORVU2Hr1G010630.1	Barley	plastid	84.57	84.57
HORVU2Hr1G010690.1	Barley	plastid	84.57	84.57
TraesCS2A01G066800.1	Wheat	plastid	84.57	84.57
TraesCS2D01G065300.1	Wheat	plastid	84.0	84.48
TraesCS2D01G065600.1	Wheat	plastid	84.0	84.0
TraesCS2A01G067300.1	Wheat	plastid	84.0	84.0
TraesCS2B01G079400.1	Wheat	plastid	84.0	84.0
TraesCS2A01G066700.1	Wheat	plastid	83.43	83.91
TraesCS2D01G065500.1	Wheat	plastid	78.86	83.64
HORVU1Hr1G035720.2	Barley	plastid	84.0	83.52
TraesCS2A01G067100.1	Wheat	plastid	83.43	83.43
TraesCS2D01G065400.1	Wheat	plastid	83.43	83.43
TraesCS2B01G079100.1	Wheat	plastid	82.86	83.33
TraesCS2A01G067200.1	Wheat	plastid	82.86	82.86
TraesCS2B01G079300.1	Wheat	plastid	82.29	82.76
TraesCS2D01G065100.2	Wheat	plastid	82.29	82.76
TraesCS2A01G067000.1	Wheat	plastid	81.71	81.71
Zm00001d004894_P001	Maize	plastid	77.14	79.41
Zm00001d052595_P001	Maize	plastid	76.57	78.82
EES09292	Sorghum	plastid	75.43	78.11
HORVU2Hr1G010670.1	Barley	plastid	84.57	77.89
GSMUA_Achr6P09710_001	Banana	plastid	70.29	77.85
GSMUA_Achr8P18400_001	Banana	cytosol	11.43	76.92
TraesCS2B01G079500.1	Wheat	plastid	84.0	76.17
TraesCS2A01G066900.1	Wheat	plastid	83.43	76.04
GSMUA_Achr2P22730_001	Banana	unclear	68.0	75.32
TraesCS2B01G078900.2	Wheat	plastid	79.43	75.14
GSMUA_Achr10P...	Banana	plasma membrane	67.43	74.68
PGSC0003DMT400067905	Potato	plastid	65.71	72.33
Solyc02g085950.2.1	Tomato	extracellular	69.71	67.78
PGSC0003DMT400032975	Potato	mitochondrion, plastid	69.71	67.78
Os12t0291200-00	Rice	plastid	36.57	66.67
KRH18247	Soybean	nucleus, plastid	67.43	66.29
KRG93871	Soybean	plastid	67.43	66.29
KRG93867	Soybean	plastid	67.43	66.29
Solyc03g034220.2.1	Tomato	plastid	68.0	66.11
Solyc02g063150.2.1	Tomato	nucleus, plastid	67.43	65.19
PGSC0003DMT400050381	Potato	cytosol, extracellular, plastid	67.43	65.19
Bra028181.1-P	Field mustard	plastid	60.0	64.81
HORVU5Hr1G050990.4	Barley	plastid	70.86	64.58
PGSC0003DMT400062138	Potato	cytosol, plastid	65.71	63.54
AT5G38430.1	Thale cress	plastid	64.57	62.43
AT5G38420.1	Thale cress	plastid	64.57	62.43
AT1G67090.1	Thale cress	plastid	64.0	62.22
Bra028174.1-P	Field mustard	plastid	63.43	61.33
CDY01665	Canola	plastid	63.43	61.33
CDY52468	Canola	plastid	63.43	61.33
CDY71122	Canola	plastid	63.43	61.33
AT5G38410.3	Thale cress	plastid	65.14	61.29
Bra025431.1-P	Field mustard	plastid	62.86	60.77
CDX74525	Canola	plastid	62.86	60.77
CDY67657	Canola	plastid	62.86	60.77
CDX74532	Canola	plastid	62.86	60.77
CDY01671	Canola	plastid	62.86	60.77
CDX67402	Canola	plastid	62.29	60.22
CDY42338	Canola	plastid	62.29	60.22
Bra028406.1-P	Field mustard	plastid	61.71	59.67
VIT_17s0000g03690.t01	Wine grape	plastid	61.14	59.44
Bra034027.1-P	Field mustard	plastid	61.14	59.12
Bra034029.1-P	Field mustard	plastid	61.14	59.12
CDY12613	Canola	plastid	61.14	59.12
CDX99682	Canola	plastid	63.43	58.73
CDY12612	Canola	cytosol	40.0	57.85
CDY12616	Canola	plastid	59.43	57.46
Bra034024.1-P	Field mustard	plastid	59.43	57.46
KRG93872	Soybean	plastid	44.0	57.04
CDY42337	Canola	plastid	58.86	56.91
KRH01757	Soybean	plastid	45.71	53.33
CDY42341	Canola	plastid	56.57	53.23
KRH46925	Soybean	plastid	26.86	52.22
KRG93873	Soybean	plastid	30.29	50.48
HORVU7Hr1G048050.2	Barley	plastid	24.57	48.86
KRG99965	Soybean	plastid	35.43	47.33
KRG99964	Soybean	plastid	25.14	44.0
Os02t0152400-01	Rice	plastid	44.0	42.08
KRH15458	Soybean	plastid	33.14	36.48

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.2	Gene3D:3.30.190.10	EntrezGene:4352016	ProteinID:ABA97173.1
ProteinID:ABG21973.1	EMBL:AK099574	ProteinID:BAF29625.1	ProteinID:BAT16789.1	ProteinID:EAZ20214.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004497	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009853	GO:GO:0009987
GO:GO:0015977	GO:GO:0015979	GO:GO:0016491	GO:GO:0016829	GO:GO:0016984	GO:GO:0055114
InterPro:IPR036385	EnsemblPlantsGene:Os12g0291400	EnsemblPlants:Os12t0291400-01	PFAM:PF00101	PFAM:PF12338	PRINTS:PR00152
PANTHER:PTHR31262	PANTHER:PTHR31262:SF0	UniProt:Q2QTJ7	InterPro:RuBisCO_sc	InterPro:RuBisCO_sc_dom	InterPro:RuBisCO_ssu_N
InterPro:RuBisCO_ssu_sf	SMART:SM00961	SUPFAM:SSF55239	UniParc:UPI00006814B2	RefSeq:XP_015619409.1	:

Description

RuBisCO small subunit 5, Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 5Similar to Petunia ribulose 1,5-bisphosphate carboxylase small subunit mRNA (clone pSSU 51), partial cds. (Fragment). (Os12t0291400-01)

Coordinates

chr12:+:11277247..11278306

Molecular Weight (calculated)

19499.5 Da

IEP (calculated)

8.863

GRAVY (calculated)

-0.168

Length

175 amino acids

Sequence
(BLAST)

001: MAPTVMASSA TSVAPFQGLK STAGLPVSRR SNSAGLGSVS NGGRISCMQV WPIEGIKKFE TLSYLPPLTV EDLLKQIEYL LRSKWVPCLE FSKVGFVYRE
101: NHRSPGYYDG RYWTMWKLPM FGCTDATQVL KELEEAKKAY PDAFVRIIGF DNVRQVQLIS FIAYKPPGCE ESGGN

Best Arabidopsis Sequence Match ( AT1G67090.1 )
(BLAST)

001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFE
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG

Arabidopsis Description

RBCS-1ARibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A178WD57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.