Factsheet for Os08t0187500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0526300-00	Rice	nucleus	23.62	58.78
Os06t0208100-00	Rice	nucleus	22.39	56.59
CDY23096	Canola	nucleus	22.7	56.06
Os01t0760800-00	Rice	nucleus	17.18	41.79
CDY71572	Canola	nucleus	36.2	30.03
Bra000807.1-P	Field mustard	nucleus	41.41	22.61
VIT_10s0116g00680.t01	Wine grape	nucleus	48.16	21.63
VIT_12s0059g02310.t01	Wine grape	nucleus	50.0	21.53
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	46.93	21.07
Os08t0136100-01	Rice	nucleus	50.61	21.02
KRH25398	Soybean	plastid	48.16	20.63
GSMUA_Achr10P...	Banana	nucleus	45.09	20.56
GSMUA_Achr11P...	Banana	plastid	49.69	20.53
Solyc10g005330.2.1	Tomato	nucleus	43.87	20.08
KRH56105	Soybean	nucleus	44.79	20.03
KRH77881	Soybean	nucleus	44.79	19.97
KRH27601	Soybean	nucleus	44.79	19.95
KRH22554	Soybean	nucleus	47.55	19.85
KRH26803	Soybean	nucleus	47.55	19.85
PGSC0003DMT400029291	Potato	nucleus	42.33	19.8
CDY21319	Canola	nucleus	42.94	19.55
CDX90879	Canola	nucleus	42.94	19.55
Bra032478.1-P	Field mustard	nucleus	42.94	19.47
CDY06167	Canola	nucleus	42.94	19.44
CDY16639	Canola	nucleus	43.56	19.37
PGSC0003DMT400005277	Potato	nucleus	43.56	19.37
CDY27417	Canola	nucleus	42.33	19.33
AT1G05230.5	Thale cress	nucleus	42.64	19.28
CDX94586	Canola	nucleus	43.25	19.26
Bra029527.1-P	Field mustard	nucleus	43.87	19.19
CDX76399	Canola	nucleus	42.02	19.16
AT4G04890.1	Thale cress	nucleus	43.25	18.98
Bra015401.1-P	Field mustard	nucleus	41.72	18.89
CDY66622	Canola	nucleus	42.02	18.74
Solyc02g080260.2.1	Tomato	nucleus	42.94	18.64
CDY10041	Canola	nucleus	42.64	18.61
Bra020872.1-P	Field mustard	nucleus	42.64	18.58
AT4G21750.3	Thale cress	nucleus	43.25	18.5
CDX79091	Canola	nucleus	42.33	18.5
PGSC0003DMT400061859	Potato	nucleus	38.96	18.43
Bra013556.1-P	Field mustard	nucleus	38.65	18.26
CDX98703	Canola	nucleus	37.42	17.55
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	35.28	17.42
CDX94054	Canola	nucleus	37.12	17.41
CDY49515	Canola	plasma membrane	42.02	16.89
Bra038757.1-P	Field mustard	nucleus	37.42	16.83
CDY46842	Canola	nucleus	42.02	16.51
KRG91238	Soybean	nucleus	35.28	15.73
KRH35579	Soybean	nucleus	37.12	15.55
Os02t0674800-01	Rice	nucleus	38.04	15.42
Os04t0569100-01	Rice	nucleus	37.42	15.14
Os10t0575600-01	Rice	nucleus	34.66	12.81
Solyc03g031760.2.1	Tomato	cytosol	21.17	10.97
Os01t0788800-01	Rice	nucleus	18.4	9.54
Os08t0292000-01	Rice	nucleus	16.56	6.83
Os04t0627000-02	Rice	cytosol, peroxisome	12.27	6.83
KRH13175	Soybean	cytosol	3.68	6.78
VIT_19s0177g00240.t01	Wine grape	cytosol, mitochondrion	4.29	5.91
Os06t0207966-00	Rice	plastid	4.29	5.32
Solyc10g006420.2.1	Tomato	cytosol	4.91	3.04
KRH27078	Soybean	extracellular, golgi, peroxisome	3.07	3.03
PGSC0003DMT400037397	Potato	cytosol	3.99	2.65
KRH22254	Soybean	cytosol	4.29	2.62

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	UniProt:A0A0P0XCM0	ProteinID:BAT04139.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	EnsemblPlantsGene:Os08g0187500	EnsemblPlants:Os08t0187500-01	PFAM:PF00046	PRINTS:PR00031	ScanProsite:PS00027
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF513	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0001B664E4
SEG:seg	:	:	:	:	:

Description

RICE OUTMOST CELL-SPECIFIC GENE 1Similar to Roc1. (Os08t0187500-01)

Coordinates

chr8:+:5109268..5116778

Molecular Weight (calculated)

37741.1 Da

IEP (calculated)

12.203

GRAVY (calculated)

-1.362

Length

326 amino acids

Sequence
(BLAST)

001: MTPARRMPPV IGRNGVAYES PSAQLPLTQA DMLDSHHLQQ ALQQQYFDQI PVTTTAAADS GDNMLHGRAD AGGLVDEFES KSCSENVDGA GDGLSGDDQD
101: PNQRPRKKRY HRHTQHQIQE MEAFFKECPH PDDKQRKELS RELGLEPLQV KFWFQNKRTQ MKNQHERHEN AQLRAENDKL RAENMRYKEA LSSASCPNCG
201: GPAALRRAPP PRRERPPPRR DRPHLRHRRQ ARRQAPHRLL PRPLLPARRR RRPLPSRPRR RLRRRHPRPR HVRRRRRPPP RRAPARRRQA HDRGARRRRH
301: GRARPDGPAR RAALVVVVGA GGGVAR

Best Arabidopsis Sequence Match ( AT1G05230.10 )
(BLAST)

001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A

Arabidopsis Description

HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.