Factsheet for Bra020872.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76399	Canola	nucleus	93.45	97.76
Bra038757.1-P	Field mustard	nucleus	87.57	90.34
AT4G21750.3	Thale cress	nucleus	89.84	88.19
Bra013556.1-P	Field mustard	nucleus	79.28	85.94
Bra029527.1-P	Field mustard	nucleus	84.49	84.83
Bra000807.1-P	Field mustard	nucleus	66.18	82.91
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	66.84	75.76
KRH27601	Soybean	nucleus	73.8	75.41
KRH77881	Soybean	nucleus	73.26	74.97
Os04t0627000-02	Rice	cytosol, peroxisome	57.49	73.38
Bra032478.1-P	Field mustard	nucleus	66.84	69.54
Bra015401.1-P	Field mustard	nucleus	66.71	69.31
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	67.25	69.28
EES11464	Sorghum	nucleus	69.12	65.53
EES13460	Sorghum	mitochondrion, nucleus	68.32	65.43
GSMUA_Achr10P...	Banana	nucleus	61.63	64.48
Zm00001d049443_P005	Maize	nucleus	68.58	64.45
TraesCS2D01G473700.1	Wheat	nucleus	66.44	64.05
TraesCS2B01G497500.1	Wheat	nucleus	66.18	63.87
TraesCS2A01G474000.1	Wheat	nucleus	66.18	63.71
Zm00001d002234_P003	Maize	nucleus	67.38	63.48
Bra000960.1-P	Field mustard	extracellular	9.89	63.25
GSMUA_Achr11P...	Banana	plastid	66.18	62.74
Os08t0136100-01	Rice	nucleus	65.37	62.29
Zm00001d026351_P003	Maize	nucleus	69.25	61.37
Zm00001d000247_P001	Maize	plasma membrane	58.96	61.34
TraesCS7B01G208600.1	Wheat	nucleus	63.9	59.9
TraesCS7A01G308400.1	Wheat	nucleus	63.64	59.8
TraesCS7D01G305200.1	Wheat	nucleus	63.37	59.55
Zm00001d024701_P001	Maize	nucleus	63.24	59.35
EES14500	Sorghum	nucleus	63.9	58.72
Bra037355.1-P	Field mustard	nucleus	51.34	48.61
Bra005588.1-P	Field mustard	nucleus	45.72	48.58
Bra003439.1-P	Field mustard	nucleus	49.2	46.88
Bra021779.1-P	Field mustard	nucleus	45.59	46.84
Bra016578.1-P	Field mustard	nucleus	42.65	46.64
Bra003846.1-P	Field mustard	nucleus	43.45	46.1
Bra004934.1-P	Field mustard	nucleus	48.4	46.06
Bra028295.1-P	Field mustard	nucleus	41.84	45.89
Bra025938.1-P	Field mustard	nucleus	41.84	45.1
Bra015996.1-P	Field mustard	nucleus	43.05	44.91
Os08t0187500-01	Rice	nucleus	18.58	42.64
Bra003535.1-P	Field mustard	nucleus	39.57	39.47
Bra017519.1-P	Field mustard	nucleus	41.71	38.24
Bra021035.1-P	Field mustard	nucleus	36.23	36.92
Bra024984.1-P	Field mustard	nucleus	39.17	36.86
Bra023611.1-P	Field mustard	nucleus	34.22	36.31
Bra020066.1-P	Field mustard	nucleus	32.49	35.63
Bra032003.1-P	Field mustard	nucleus	32.22	34.98
Bra008562.1-P	Field mustard	cytosol, nucleus, plastid	33.69	34.85
Bra003213.1-P	Field mustard	nucleus	32.75	34.51
Bra021363.1-P	Field mustard	nucleus	33.02	33.98
Bra013898.1-P	Field mustard	nucleus	26.34	31.62
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	8.82	23.08

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	EnsemblPlantsGene:Bra020872	EnsemblPlants:Bra020872.1	EnsemblPlants:Bra020872.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	UniProt:M4DWH8	PFAM:PF00046	PFAM:PF01852
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF320	SMART:SM00234
SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI0002545C21	SEG:seg

Description

AT4G21750 (E=0.0) ATML1 | ATML1 (MERISTEM LAYER 1); DNA binding / sequence-specific DNA binding / transcription factor

Coordinates

chrA08:+:11524397..11529906

Molecular Weight (calculated)

82408.5 Da

IEP (calculated)

5.346

GRAVY (calculated)

-0.338

Length

748 amino acids

Sequence
(BLAST)

001: MYHPNMFESH HHMFDMTKSS DNDLGLTGSR EDDFETKSGA EVTLDNPLEE ELQDPDQRPN KKKRYHRHTQ RQIQELESFF KECPHPDDKQ RKELSRELNL
101: EPLQIKFWFQ NKRTQMKAQH ERHENSILKS DNDKLRAENN RYKDALSNAT CPNCGGPAAI GEMSFDEQHL RIENARLHEE IDRISFIAAK YVGKPMLPHS
201: SPFSQLTTST HIPTRSLDLE VGSFGNNNSS QTGFVGDIYG TNDIMRSVSI PCESDKPMIV ELAVAAMEEL VRMAQTGDPL WVSSDSSGEI LNEDEYFRTF
301: PRGIGPKPIG LRSEASREST VVIMNQINLV EILMDVNQWS SVFCGIVSRA LTLDVLSTGV AGNYNGALQV LTAEFQVQSP LVPTRENYFV RYCKQHSDTT
401: WAVVDVSLES LRPSPITRSR RRPSGCVIQE LQNGYSKVTW VEHTEVDDIS VHTMYKPLVN AGLAFGAKRW VATLDRQCER LASSMASNIP TGDLSVITSP
501: EGRKSMLKLA ERMVMSFCSG VGASTAHAWS TLAATGSDDV RVMTRKSMDD PGRPPGIVLS AATSFWIPMG LKRVFDFLRD ENSRSQWDIL SNGGLVEEMA
601: HIANGRDPGN SVSLLRVNSS NSGESNMLIL QESCTDASGS YVIYAPVDMM AMNVVLSGGD PDYVALLPSG FAILPDGSTR GGNASVVAEG EVVTSTASNC
701: GSLLTVAFQI LVDSVPTAKL SLGSVATVNS LIKCTVQRIK DALACDGA

Best Arabidopsis Sequence Match ( AT4G21750.2 )
(BLAST)

001: MYHPNMFESH HHMFDMTPKN SENDLGITGS HEEDFETKSG AEVTMENPLE EELQDPNQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRELS
101: LEPLQVKFWF QNKRTQMKAQ HERHENQILK SENDKLRAEN NRYKDALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLMAN
201: SSSFPQLSSS HHIPSRSLDL EVGNFGNNNN SHTGFVGEMF GSSDILRSVS IPSEADKPMI VELAVAAMEE LVRMAQTGDP LWVSSDNSVE ILNEEEYFRT
301: FPRGIGPKPI GLRSEASRES TVVIMNHINL IEILMDVNQW SSVFCGIVSR ALTLEVLSTG VAGNYNGALQ VMTAEFQVPS PLVPTRENYF VRYCKQHSDG
401: IWAVVDVSLD SLRPSPITRS RRRPSGCLIQ ELQNGYSKVT WVEHIEVDDR SVHNMYKPLV NTGLAFGAKR WVATLDRQCE RLASSMASNI PACDLSVITS
501: PEGRKSMLKL AERMVMSFCT GVGASTAHAW TTLSTTGSDD VRVMTRKSMD DPGRPPGIVL SAATSFWIPV APKRVFDFLR DENSRSEWDI LSNGGLVQEM
601: AHIANGRDPG NSVSLLRVNS GNSGQSNMLI LQESCTDASG SYVIYAPVDI IAMNVVLSGG DPDYVALLPS GFAILPDGSA RGGGGSANAS AGAGVEGGGE
701: GNNLEVVTTT GSCGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIKCTV ERIKAALACD GA

Arabidopsis Description

ATML1ATML1 [Source:UniProtKB/TrEMBL;Acc:A0A178UZ61]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.