Factsheet for Bra023611.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85461	Canola	cytosol	99.72	99.72
Bra003213.1-P	Field mustard	nucleus	69.08	68.59
Bra008562.1-P	Field mustard	cytosol, nucleus, plastid	69.93	68.19
AT1G34650.1	Thale cress	nucleus	61.56	61.3
AT5G17320.1	Thale cress	nucleus	61.42	60.31
Os06t0208100-00	Rice	nucleus	10.5	57.36
Bra020066.1-P	Field mustard	nucleus	47.94	49.56
Bra032003.1-P	Field mustard	nucleus	48.09	49.2
Bra021363.1-P	Field mustard	nucleus	48.65	47.18
VIT_04s0079g00480.t01	Wine grape	nucleus	45.11	44.54
Bra000960.1-P	Field mustard	extracellular	6.95	41.88
Solyc09g066070.2.1	Tomato	cytosol	25.53	41.76
TraesCS6A01G324500.1	Wheat	nucleus	39.43	40.58
TraesCS6D01G304300.1	Wheat	nucleus	39.43	40.58
KRH11810	Soybean	nucleus	40.99	40.53
PGSC0003DMT400051268	Potato	cytosol	28.51	40.28
Solyc09g057530.1.1	Tomato	cytosol	7.8	40.15
PGSC0003DMT400038820	Potato	extracellular	20.71	40.11
TraesCS6B01G354900.3	Wheat	nucleus	39.29	39.74
Solyc10g018030.1.1	Tomato	cytosol	23.26	39.71
GSMUA_Achr6P05990_001	Banana	nucleus	33.9	39.64
Zm00001d018225_P001	Maize	nucleus	38.87	39.6
KRH36827	Soybean	nucleus	39.72	39.49
PGSC0003DMT400085057	Potato	cytosol	26.67	39.33
Zm00001d052133_P001	Maize	nucleus	38.87	39.26
PGSC0003DMT400034503	Potato	cytosol, nucleus	37.87	39.21
Solyc09g060130.1.1	Tomato	cytosol	24.68	39.19
Zm00001d044973_P001	Maize	nucleus	38.3	39.19
Solyc09g057540.2.1	Tomato	cytosol	27.52	39.03
Zm00001d037140_P004	Maize	nucleus	38.01	39.01
GSMUA_Achr10P...	Banana	nucleus	37.59	38.86
EES05874	Sorghum	nucleus	38.87	38.76
Bra016578.1-P	Field mustard	nucleus	37.59	38.74
Solyc07g026560.1.1	Tomato	cytosol	25.96	38.69
GSMUA_Achr10P...	Banana	nucleus	38.87	38.54
EER89393	Sorghum	nucleus	38.16	38.43
Solyc09g066050.2.1	Tomato	cytosol	29.93	38.16
Solyc11g011940.1.1	Tomato	nucleus	38.72	38.08
Solyc11g022420.1.1	Tomato	cytosol	25.67	37.79
Solyc09g060170.1.1	Tomato	cytosol	18.3	37.5
Bra003846.1-P	Field mustard	nucleus	37.45	37.45
Solyc07g037910.1.1	Tomato	cytosol	11.21	37.44
GSMUA_Achr2P15140_001	Banana	nucleus	39.15	37.35
KRH36826	Soybean	nucleus	37.73	37.31
PGSC0003DMT400051266	Potato	cytosol	20.57	37.28
Bra025938.1-P	Field mustard	nucleus	36.6	37.18
Bra015996.1-P	Field mustard	nucleus	37.59	36.96
Solyc09g060140.2.1	Tomato	mitochondrion	19.29	36.96
Solyc04g025490.1.1	Tomato	cytosol	12.62	36.78
GSMUA_Achr7P11310_001	Banana	nucleus	38.3	36.68
Os06t0207966-00	Rice	plastid	13.62	36.5
Solyc05g015030.1.1	Tomato	cytosol	24.54	36.5
Bra000807.1-P	Field mustard	nucleus	30.64	36.18
Solyc09g066030.1.1	Tomato	nucleus	37.02	36.1
Solyc08g062510.2.1	Tomato	nucleus	33.05	35.68
Solyc10g018020.1.1	Tomato	extracellular	16.88	35.42
Bra015401.1-P	Field mustard	nucleus	35.46	34.72
Solyc10g018000.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	34.18	34.48
PGSC0003DMT400036411	Potato	nucleus	25.67	34.48
Bra032478.1-P	Field mustard	nucleus	35.04	34.35
Bra020872.1-P	Field mustard	nucleus	36.31	34.22
TraesCS7A01G167900.1	Wheat	nucleus	35.18	34.21
TraesCS7B01G072700.1	Wheat	nucleus	35.32	34.11
Bra029527.1-P	Field mustard	nucleus	35.89	33.96
TraesCS7D01G168700.1	Wheat	nucleus	34.89	33.61
Bra038757.1-P	Field mustard	nucleus	34.33	33.38
Solyc08g062520.2.1	Tomato	cytosol	23.97	33.07
Bra028295.1-P	Field mustard	nucleus	31.77	32.84
Solyc04g025480.1.1	Tomato	cytosol	29.79	32.06
Solyc07g026570.1.1	Tomato	nucleus	6.38	31.91
KRH42428	Soybean	nucleus	33.9	31.57
Bra013556.1-P	Field mustard	nucleus	30.5	31.16
Bra003439.1-P	Field mustard	nucleus	34.18	30.7
Bra037355.1-P	Field mustard	nucleus	34.33	30.63
Bra005588.1-P	Field mustard	nucleus	30.5	30.54
Bra003535.1-P	Field mustard	nucleus	31.35	29.47
Bra004934.1-P	Field mustard	nucleus	32.77	29.39
Bra021779.1-P	Field mustard	nucleus	30.21	29.26
KRH42429	Soybean	cytosol	29.36	28.36
Bra021035.1-P	Field mustard	nucleus	28.94	27.79
Bra024984.1-P	Field mustard	nucleus	30.92	27.42
Bra017519.1-P	Field mustard	nucleus	31.06	26.84
Bra013898.1-P	Field mustard	nucleus	20.85	23.6
TraesCSU01G150000.1	Wheat	nucleus	7.09	22.94
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	8.23	20.28
TraesCSU01G244000.1	Wheat	nucleus	5.82	19.9
HORVU3Hr1G022170.1	Barley	cytosol	2.7	15.97

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	Gene3D:3.30.530.20	EnsemblPlantsGene:Bra023611	EnsemblPlants:Bra023611.1	EnsemblPlants:Bra023611.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:M4E4A8	PFAM:PF00046	PFAM:PF01852
PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF504	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI00025430C6	SEG:seg

Description

AT5G17320 (E=2e-222) HDG9 | HDG9 (HOMEODOMAIN GLABROUS 9); DNA binding / sequence-specific DNA binding / transcription factor

Coordinates

chrA02:-:4179983..4184234

Molecular Weight (calculated)

79603.7 Da

IEP (calculated)

6.635

GRAVY (calculated)

-0.401

Length

705 amino acids

Sequence
(BLAST)

001: MDSNHDSSSS NGLETSMSTT NRDNKIYHRH SVHQIQRLEA YFKECPHPDD TQRHKLGEEL KLKPKQIKFW FQNKRTQAKA QSEKVFNASL RAENIRIRRE
101: NEVIQEALKT VTCPPCGGPR PGKEERKLYL QKMRAHNTYL KRQLEQISDF VNNNGGHSIP SVNSLASTSS NPHFSYGTSS NRPLEPPSLE REQYTHEHIN
201: NAQPTQHFQP LSQMEKMMMS QTMVNAVTEI IRLIHIEEPM WIKSSIDDRL VIDQENYEKS FTNISHLKSP SARIESSKDV VVVHMDARNL VDMFFDTEKW
301: ARIFSTIVNE AKTIHVLESM DTQRQNFSQL MYEQLHILSP LVPPREFIIL RCCQQIEDDL WVIADVSCHH VNIDFESPTC SKRPSGCLIQ ALPNGLSKVT
401: WMEHVEVNEK VRTHRIYRDL LCGGFGYGAR RWTVTLERMC ERLHLSSISV FPTTDFAGVV ETIEGRRSVM NLGERMLKNF AWILKMSGNY DFSQLSETNS
501: SGVRVSVRVN SEAGQPTGLI VCAASSICLP LSPLEVYNFL TNLEIRHQWD VLCHGYPAAE VAGFATGTDD KNRVNILQTA STAEDADMMI IQDSFRDALG
601: GMVVYAPVDL NTASAAVSGQ VNPSGIPILP SGFIISRDGH HFTSPELEDG SDYSKSLLTV AFQILVSGPT LSGDLQIEES TTTVNTLITS TLQRIKVMLN
701: CNEGK

Best Arabidopsis Sequence Match ( AT5G17320.1 )
(BLAST)

001: MDFTRDDNSS DERENDVDAN TNNRHEKKGY HRHTNEQIHR LETYFKECPH PDEFQRRLLG EELNLKPKQI KFWFQNKRTQ AKSHNEKADN AALRAENIKI
101: RRENESMEDA LNNVVCPPCG GRGPGREDQL RHLQKLRAQN AYLKDEYERV SNYLKQYGGH SMHNVEATPY LHGPSNHAST SKNRPALYGT SSNRLPEPSS
201: IFRGPYTRGN MNTTAPPQPR KPLEMQNFQP LSQLEKIAML EAAEKAVSEV LSLIQMDDTM WKKSSIDDRL VIDPGLYEKY FTKTNTNGRP ESSKDVVVVQ
301: MDAGNLIDIF LTAEKWARLF PTIVNEAKTI HVLDSVDHRG KTFSRVIYEQ LHILSPLVPP REFMILRTCQ QIEDNVWMIA DVSCHLPNIE FDLSFPICTK
401: RPSGVLIQAL PHGFSKVTWI EHVVVNDNRV RPHKLYRDLL YGGFGYGARR WTVTLERTCE RLIFSTSVPA LPNNDNPGVV QTIRGRNSVM HLGERMLRNF
501: AWMMKMVNKL DFSPQSETNN SGIRIGVRIN NEAGQPPGLI VCAGSSLSLP LPPVQVYDFL KNLEVRHQWD VLCHGNPATE AARFVTGSNP RNTVSFLEPS
601: IRDINTKLMI LQDSFKDALG GMVAYAPMDL NTACAAISGD IDPTTIPILP SGFMISRDGR PSEGEAEGGS YTLLTVAFQI LVSGPSYSPD TNLEVSATTV
701: NTLISSTVQR IKAMLKCE

Arabidopsis Description

HDG9Homeobox-leucine zipper protein HDG9 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFI0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.