Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os06t0208100-00 | Rice | nucleus | 12.9 | 68.22 |
| GSMUA_Achr10P... | Banana | nucleus | 65.98 | 63.29 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 66.13 | 61.28 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 64.37 | 59.4 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 52.2 | 59.04 |
| Zm00001d018225_P001 | Maize | nucleus | 59.38 | 58.53 |
| Zm00001d052133_P001 | Maize | nucleus | 58.8 | 57.45 |
| EES05874 | Sorghum | nucleus | 59.38 | 57.28 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 57.48 | 57.23 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 57.18 | 56.93 |
| KRH38939 | Soybean | nucleus | 60.12 | 56.79 |
| Os06t0207966-00 | Rice | plastid | 21.7 | 56.27 |
| KRH09477 | Soybean | nucleus | 59.24 | 56.27 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 58.5 | 56.2 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 57.33 | 56.1 |
| KRH60596 | Soybean | nucleus | 57.48 | 54.98 |
| Zm00001d037140_P004 | Maize | nucleus | 54.99 | 54.59 |
| Zm00001d044973_P001 | Maize | nucleus | 55.13 | 54.57 |
| KRH41898 | Soybean | nucleus | 57.62 | 54.51 |
| HORVU6Hr1G079410.6 | Barley | nucleus | 57.48 | 54.07 |
| EER89393 | Sorghum | nucleus | 54.99 | 53.57 |
| PGSC0003DMT400069312 | Potato | nucleus | 55.57 | 53.01 |
| Solyc06g072310.2.1 | Tomato | nucleus | 55.57 | 52.86 |
| Solyc03g098200.2.1 | Tomato | nucleus | 55.57 | 52.57 |
| CDX96744 | Canola | nucleus | 50.29 | 50.97 |
| AT1G73360.1 | Thale cress | nucleus | 53.67 | 50.69 |
| AT1G17920.1 | Thale cress | nucleus | 50.88 | 50.51 |
| Bra016578.1-P | Field mustard | nucleus | 50.29 | 50.15 |
| CDX68229 | Canola | nucleus | 51.32 | 49.79 |
| CDX96471 | Canola | nucleus | 52.35 | 49.72 |
| Bra015996.1-P | Field mustard | nucleus | 52.2 | 49.65 |
| CDX72984 | Canola | nucleus | 52.05 | 49.65 |
| Bra003846.1-P | Field mustard | nucleus | 51.32 | 49.65 |
| CDX83884 | Canola | nucleus | 49.85 | 49.63 |
| CDY11109 | Canola | nucleus | 51.32 | 49.3 |
| CDY26204 | Canola | nucleus | 46.04 | 49.29 |
| CDY19185 | Canola | nucleus | 48.83 | 48.83 |
| CDY26205 | Canola | nucleus | 48.97 | 48.41 |
| CDY42097 | Canola | nucleus | 36.51 | 48.16 |
| Bra025938.1-P | Field mustard | nucleus | 48.83 | 47.98 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 48.83 | 45.93 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 48.83 | 45.49 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 48.24 | 45.07 |
| VIT_04s0079g00480.t01 | Wine grape | nucleus | 45.89 | 43.84 |
| GSMUA_Achr3P23090_001 | Banana | endoplasmic reticulum, plasma membrane | 42.23 | 43.64 |
| Solyc09g057530.1.1 | Tomato | cytosol | 8.65 | 43.07 |
| GSMUA_Achr8P07310_001 | Banana | mitochondrion, nucleus | 43.7 | 41.05 |
| KRH11810 | Soybean | nucleus | 41.5 | 39.69 |
| GSMUA_Achr10P... | Banana | nucleus | 41.5 | 39.58 |
| GSMUA_Achr11P... | Banana | nucleus | 42.96 | 39.38 |
| HORVU7Hr1G035230.2 | Barley | nucleus | 42.96 | 39.38 |
| KRH36827 | Soybean | nucleus | 40.62 | 39.07 |
| GSMUA_Achr1P18760_001 | Banana | nucleus | 43.26 | 39.02 |
| GSMUA_Achr5P14100_001 | Banana | nucleus | 42.96 | 38.76 |
| GSMUA_Achr7P00210_001 | Banana | nucleus | 38.42 | 38.59 |
| GSMUA_Achr11P... | Banana | nucleus | 43.4 | 38.14 |
| PGSC0003DMT400051268 | Potato | cytosol | 27.86 | 38.08 |
| Bra023611.1-P | Field mustard | nucleus | 38.86 | 37.59 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.38 | 37.58 |
| CDX85461 | Canola | cytosol | 38.71 | 37.45 |
| GSMUA_Achr11P... | Banana | plastid | 43.11 | 37.26 |
| GSMUA_Achr5P20050_001 | Banana | nucleus | 43.4 | 37.23 |
| Solyc09g060140.2.1 | Tomato | mitochondrion | 20.09 | 37.23 |
| CDY62389 | Canola | cytosol | 26.69 | 37.22 |
| Solyc09g066070.2.1 | Tomato | cytosol | 23.46 | 37.12 |
| AT3G03260.1 | Thale cress | nucleus | 37.98 | 37.05 |
| GSMUA_Achr5P10510_001 | Banana | nucleus | 43.11 | 36.98 |
| GSMUA_Achr4P19010_001 | Banana | nucleus | 43.4 | 36.95 |
| KRH36826 | Soybean | nucleus | 38.12 | 36.47 |
| PGSC0003DMT400085057 | Potato | cytosol | 25.37 | 36.19 |
| Solyc09g066050.2.1 | Tomato | cytosol | 29.33 | 36.17 |
| AT5G17320.1 | Thale cress | nucleus | 37.98 | 36.07 |
| Solyc10g018030.1.1 | Tomato | cytosol | 21.7 | 35.84 |
| CDY53691 | Canola | nucleus | 37.1 | 35.63 |
| Bra003213.1-P | Field mustard | nucleus | 36.95 | 35.49 |
| GSMUA_Achr3P12410_001 | Banana | nucleus | 38.56 | 35.44 |
| Solyc09g057540.2.1 | Tomato | cytosol | 25.81 | 35.41 |
| PGSC0003DMT400034503 | Potato | cytosol, nucleus | 35.34 | 35.39 |
| AT1G34650.1 | Thale cress | nucleus | 36.66 | 35.31 |
| CDY42301 | Canola | nucleus | 35.63 | 35.22 |
| Bra020066.1-P | Field mustard | nucleus | 35.19 | 35.19 |
| CDY02713 | Canola | nucleus | 38.12 | 35.18 |
| Bra008562.1-P | Field mustard | cytosol, nucleus, plastid | 37.24 | 35.13 |
| PGSC0003DMT400038820 | Potato | extracellular | 18.62 | 34.89 |
| CDY49937 | Canola | nucleus | 35.34 | 34.73 |
| CDY44946 | Canola | nucleus | 32.84 | 34.57 |
| Bra032003.1-P | Field mustard | nucleus | 34.9 | 34.54 |
| CDY67945 | Canola | nucleus | 34.9 | 34.54 |
| PGSC0003DMT400051266 | Potato | cytosol | 19.65 | 34.45 |
| CDY16938 | Canola | nucleus | 33.28 | 34.39 |
| Solyc09g060170.1.1 | Tomato | cytosol | 17.3 | 34.3 |
| CDY21211 | Canola | nucleus | 34.9 | 34.29 |
| CDY43137 | Canola | nucleus | 34.6 | 34.25 |
| Bra021363.1-P | Field mustard | nucleus | 36.36 | 34.11 |
| Solyc07g026560.1.1 | Tomato | cytosol | 23.61 | 34.04 |
| Solyc11g011940.1.1 | Tomato | nucleus | 35.78 | 34.03 |
| Solyc11g022420.1.1 | Tomato | cytosol | 23.75 | 33.82 |
| Solyc09g060130.1.1 | Tomato | cytosol | 21.99 | 33.78 |
| Solyc08g062510.2.1 | Tomato | nucleus | 32.11 | 33.54 |
| KRH42428 | Soybean | nucleus | 37.1 | 33.42 |
| Solyc10g018020.1.1 | Tomato | extracellular | 16.42 | 33.33 |
| GSMUA_Achr3P15400_001 | Banana | nucleus | 36.51 | 33.24 |
| Solyc05g015030.1.1 | Tomato | cytosol | 23.02 | 33.12 |
| Solyc09g066030.1.1 | Tomato | nucleus | 35.04 | 33.06 |
| CDY69499 | Canola | cytosol | 14.22 | 31.91 |
| Solyc04g025490.1.1 | Tomato | cytosol | 11.29 | 31.82 |
| Solyc07g037910.1.1 | Tomato | cytosol | 9.82 | 31.75 |
| Solyc10g018000.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 32.11 | 31.33 |
| Solyc08g062520.2.1 | Tomato | cytosol | 23.46 | 31.31 |
| GSMUA_Achr8P27340_001 | Banana | nucleus | 34.16 | 31.11 |
| PGSC0003DMT400036411 | Potato | nucleus | 23.9 | 31.05 |
| Solyc04g025480.1.1 | Tomato | cytosol | 29.77 | 30.99 |
| Solyc07g026570.1.1 | Tomato | nucleus | 6.16 | 29.79 |
| KRH42429 | Soybean | cytosol | 30.65 | 28.63 |
| TraesCSU01G150000.1 | Wheat | nucleus | 8.06 | 25.23 |
| TraesCSU01G244000.1 | Wheat | nucleus | 6.74 | 22.33 |
| Bra007562.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 9.09 | 21.68 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008289 |
| EnsemblPlantsGene:GSMUA_Achr10G17790_001 | EnsemblPlants:GSMUA_Achr10P17790_001 | EnsemblPlants:GSMUA_Achr10T17790_001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:IPR002913 | UniProt:M0RJ54 | PFAM:PF00046 | PFAM:PF01852 | PFscan:PS50071 | PFscan:PS50848 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF490 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 |
| InterPro:START_lipid-bd_dom | UniParc:UPI000296A2AD | SEG:seg | : | : | : |
Description
Homeobox-leucine zipper protein ROC8 [Source:GMGC_GENE;Acc:GSMUA_Achr10G17790_001]
Coordinates
chr10:-:24840086..24843716
Molecular Weight (calculated)
75963.2 Da
IEP (calculated)
7.788
GRAVY (calculated)
-0.213
Length
682 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSVGERDVS EVQRRKKRFY RHTSQQIQEL EAMFKVCPHP DEKQRMKLSR DLGLEPRQIK FWFQNRRTLM KATFPFPFFS MILQSDNCSL RAENDKIRCE
101: NITMEEALKR AVCLSCGAGP PPDNPFFDEQ KLRMENTRLK EEVDRLSEIA SRYLGRPITQ LPSSQRLSVS QSESSSSVLS NPSPTTISDL EKPIMMDMAS
201: AALEEVVKLI QTNEPLWLKS ASMGTEVLQS ETYERIFQRP SQQQFKFSDT RTEASRGSAL VIMDAATLVD MFMDSSKWME LFPTIVSNSR TIDVLASGTS
301: GTRSGSLLLM YEELQVLSPV VPTRHFCFLR YCQQIDPCLW VIADVSVNYP MDSRHLPSPL SCKLPSGCLI EAMPNGYSKV SWVEHVQFQE KNTIHRLFRD
401: LVNSGTSFGA NRWLTTLQRM SQRFACLMSA GLSTRDIAGA VPSVEAKKSM MKLAHRLVMD FCASFSASVG NKWTMLSGIN DDLRVTLHRT DSSLPHGVVL
501: SAATSIWLPL PRDRVFSFLK DEQNRPQWDV FSIGNNLQKV AHITNGSDQG NAISILRGLN YTHNMLILQE SCTDASGSVV VYSPIDLPAM NTIMSGEDPS
601: YIHILPSGFT ILPDGRFGVG GGASTSSCPT GRPSGSLVTV AFQMLMSSSP GAKLSFESIA TVNNSISNTI HQIKAALSCP SV
101: NITMEEALKR AVCLSCGAGP PPDNPFFDEQ KLRMENTRLK EEVDRLSEIA SRYLGRPITQ LPSSQRLSVS QSESSSSVLS NPSPTTISDL EKPIMMDMAS
201: AALEEVVKLI QTNEPLWLKS ASMGTEVLQS ETYERIFQRP SQQQFKFSDT RTEASRGSAL VIMDAATLVD MFMDSSKWME LFPTIVSNSR TIDVLASGTS
301: GTRSGSLLLM YEELQVLSPV VPTRHFCFLR YCQQIDPCLW VIADVSVNYP MDSRHLPSPL SCKLPSGCLI EAMPNGYSKV SWVEHVQFQE KNTIHRLFRD
401: LVNSGTSFGA NRWLTTLQRM SQRFACLMSA GLSTRDIAGA VPSVEAKKSM MKLAHRLVMD FCASFSASVG NKWTMLSGIN DDLRVTLHRT DSSLPHGVVL
501: SAATSIWLPL PRDRVFSFLK DEQNRPQWDV FSIGNNLQKV AHITNGSDQG NAISILRGLN YTHNMLILQE SCTDASGSVV VYSPIDLPAM NTIMSGEDPS
601: YIHILPSGFT ILPDGRFGVG GGASTSSCPT GRPSGSLVTV AFQMLMSSSP GAKLSFESIA TVNNSISNTI HQIKAALSCP SV
001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
Arabidopsis Description
HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.