Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G73360.1 | KXG38837 | AT4G17710.1 | 21798944 |
| AT1G73360.1 | EES09292 | AT5G38420.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d037140_P004 | Maize | nucleus | 94.29 | 96.07 |
| Zm00001d044973_P001 | Maize | nucleus | 94.14 | 95.65 |
| Os06t0208100-00 | Rice | nucleus | 17.14 | 93.02 |
| Os06t0207966-00 | Rice | plastid | 29.71 | 79.09 |
| EES05874 | Sorghum | nucleus | 78.0 | 77.23 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 69.43 | 66.39 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 68.71 | 66.34 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 68.71 | 65.89 |
| GSMUA_Achr10P... | Banana | nucleus | 61.43 | 60.48 |
| KRH09477 | Soybean | nucleus | 62.0 | 60.45 |
| KRH38939 | Soybean | nucleus | 62.14 | 60.25 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 59.86 | 59.01 |
| KRH60596 | Soybean | nucleus | 59.14 | 58.06 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 61.0 | 58.02 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 61.14 | 57.92 |
| HORVU7Hr1G035230.2 | Barley | nucleus | 61.29 | 57.66 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 49.57 | 57.55 |
| KRH41898 | Soybean | nucleus | 58.86 | 57.14 |
| Solyc03g098200.2.1 | Tomato | nucleus | 58.0 | 56.31 |
| GSMUA_Achr10P... | Banana | nucleus | 53.57 | 54.99 |
| PGSC0003DMT400069312 | Potato | nucleus | 55.43 | 54.27 |
| Solyc06g072310.2.1 | Tomato | nucleus | 55.43 | 54.11 |
| CDX96744 | Canola | nucleus | 50.86 | 52.9 |
| AT1G17920.1 | Thale cress | nucleus | 51.71 | 52.69 |
| AT1G73360.1 | Thale cress | nucleus | 53.86 | 52.22 |
| Bra016578.1-P | Field mustard | nucleus | 50.71 | 51.9 |
| CDX83884 | Canola | nucleus | 50.71 | 51.82 |
| CDX68229 | Canola | nucleus | 52.0 | 51.78 |
| Bra003846.1-P | Field mustard | nucleus | 52.0 | 51.63 |
| CDY26204 | Canola | nucleus | 46.57 | 51.18 |
| CDY11109 | Canola | nucleus | 51.43 | 50.7 |
| CDY19185 | Canola | nucleus | 49.29 | 50.59 |
| CDX96471 | Canola | nucleus | 51.86 | 50.56 |
| Bra015996.1-P | Field mustard | nucleus | 51.43 | 50.21 |
| CDX72984 | Canola | nucleus | 51.14 | 50.07 |
| Bra025938.1-P | Field mustard | nucleus | 49.29 | 49.71 |
| CDY26205 | Canola | nucleus | 49.0 | 49.71 |
| CDY42097 | Canola | nucleus | 36.71 | 49.71 |
| VIT_04s0079g00480.t01 | Wine grape | nucleus | 49.71 | 48.74 |
| Solyc09g057530.1.1 | Tomato | cytosol | 8.43 | 43.07 |
| EES13460 | Sorghum | mitochondrion, nucleus | 47.86 | 42.89 |
| EES11464 | Sorghum | nucleus | 48.0 | 42.59 |
| KRH11810 | Soybean | nucleus | 41.86 | 41.09 |
| KRH36827 | Soybean | nucleus | 41.14 | 40.62 |
| EES14500 | Sorghum | nucleus | 47.0 | 40.42 |
| AT3G03260.1 | Thale cress | nucleus | 39.86 | 39.91 |
| EES02604 | Sorghum | nucleus | 46.14 | 39.63 |
| KXG26935 | Sorghum | nucleus | 44.0 | 38.4 |
| CDX85461 | Canola | cytosol | 38.57 | 38.3 |
| CDY42301 | Canola | nucleus | 37.71 | 38.26 |
| Bra023611.1-P | Field mustard | nucleus | 38.43 | 38.16 |
| Bra020066.1-P | Field mustard | nucleus | 36.86 | 37.83 |
| AT5G17320.1 | Thale cress | nucleus | 38.71 | 37.74 |
| Bra032003.1-P | Field mustard | nucleus | 37.0 | 37.59 |
| Solyc09g066070.2.1 | Tomato | cytosol | 23.14 | 37.59 |
| CDY43137 | Canola | nucleus | 36.71 | 37.3 |
| CDY67945 | Canola | nucleus | 36.71 | 37.3 |
| CDY53691 | Canola | nucleus | 37.43 | 36.9 |
| EER99222 | Sorghum | nucleus | 45.86 | 36.81 |
| Bra003213.1-P | Field mustard | nucleus | 37.29 | 36.76 |
| CDY62389 | Canola | cytosol | 25.57 | 36.61 |
| AT1G34650.1 | Thale cress | nucleus | 36.86 | 36.44 |
| CDY44946 | Canola | nucleus | 33.57 | 36.27 |
| CDY02713 | Canola | nucleus | 38.29 | 36.27 |
| Solyc07g026570.1.1 | Tomato | nucleus | 7.29 | 36.17 |
| Solyc09g060140.2.1 | Tomato | mitochondrion | 19.0 | 36.14 |
| CDY49937 | Canola | nucleus | 35.71 | 36.02 |
| Solyc11g011940.1.1 | Tomato | nucleus | 36.86 | 35.98 |
| PGSC0003DMT400034503 | Potato | cytosol, nucleus | 35.0 | 35.98 |
| PGSC0003DMT400085057 | Potato | cytosol | 24.29 | 35.56 |
| Bra008562.1-P | Field mustard | cytosol, nucleus, plastid | 36.71 | 35.55 |
| KRH36826 | Soybean | nucleus | 36.14 | 35.48 |
| CDY21211 | Canola | nucleus | 35.14 | 35.45 |
| Solyc09g057540.2.1 | Tomato | cytosol | 25.14 | 35.41 |
| Bra021363.1-P | Field mustard | nucleus | 36.57 | 35.21 |
| Solyc09g060170.1.1 | Tomato | cytosol | 17.29 | 35.17 |
| Solyc10g018030.1.1 | Tomato | cytosol | 20.71 | 35.11 |
| Solyc08g062510.2.1 | Tomato | nucleus | 32.57 | 34.92 |
| PGSC0003DMT400051268 | Potato | cytosol | 24.86 | 34.87 |
| KXG38837 | Sorghum | nucleus | 43.86 | 34.81 |
| Solyc09g060130.1.1 | Tomato | cytosol | 22.0 | 34.68 |
| Solyc09g066030.1.1 | Tomato | nucleus | 35.71 | 34.58 |
| CDY16938 | Canola | nucleus | 32.29 | 34.24 |
| Solyc05g015030.1.1 | Tomato | cytosol | 22.86 | 33.76 |
| Solyc10g018020.1.1 | Tomato | extracellular | 16.14 | 33.63 |
| CDY69499 | Canola | cytosol | 14.57 | 33.55 |
| Solyc09g066050.2.1 | Tomato | cytosol | 26.43 | 33.45 |
| PGSC0003DMT400038820 | Potato | extracellular | 17.14 | 32.97 |
| PGSC0003DMT400051266 | Potato | cytosol | 18.29 | 32.9 |
| Solyc10g018000.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 32.71 | 32.76 |
| Solyc04g025490.1.1 | Tomato | cytosol | 11.29 | 32.64 |
| KRH42428 | Soybean | nucleus | 35.29 | 32.63 |
| Solyc11g022420.1.1 | Tomato | cytosol | 21.86 | 31.94 |
| Solyc08g062520.2.1 | Tomato | cytosol | 23.14 | 31.7 |
| Solyc07g026560.1.1 | Tomato | cytosol | 21.0 | 31.08 |
| Solyc04g025480.1.1 | Tomato | cytosol | 28.86 | 30.84 |
| PGSC0003DMT400036411 | Potato | nucleus | 22.71 | 30.29 |
| OQU87592 | Sorghum | nucleus | 30.43 | 29.96 |
| KRH42429 | Soybean | cytosol | 30.14 | 28.9 |
| OQU81266 | Sorghum | nucleus | 31.57 | 28.74 |
| EER98409 | Sorghum | nucleus | 29.86 | 28.63 |
| Solyc07g037910.1.1 | Tomato | cytosol | 8.43 | 27.96 |
| OQU81174 | Sorghum | nucleus | 29.43 | 27.91 |
| TraesCSU01G150000.1 | Wheat | nucleus | 8.29 | 26.61 |
| EES01587 | Sorghum | nucleus | 28.43 | 26.18 |
| Bra007562.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 10.0 | 24.48 |
| TraesCSU01G244000.1 | Wheat | nucleus | 7.0 | 23.79 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | EntrezGene:8077335 | UniProt:C5Z6D6 | ncoils:Coil | EnsemblPlants:EER89393 |
| ProteinID:EER89393 | ProteinID:EER89393.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 | PFAM:PF00046 |
| PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF236 |
| SMART:SM00234 | SMART:SM00389 | EnsemblPlantsGene:SORBI_3010G078700 | SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom |
| UniParc:UPI0001A897E5 | RefSeq:XP_002438026.1 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr10:-:6604879..6609516
Molecular Weight (calculated)
76543.0 Da
IEP (calculated)
6.285
GRAVY (calculated)
-0.208
Length
700 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFGDEPEGS DSQRQRKRYH RHTPRQIQQL EAMFKECPHP DENQRAALSR ELGLEPRQIK FWFQNRRTQM KAQHERADNC FLRAENDKIR CENITMREAL
101: KNVICPNCGG PPVAEDFFDE QKLRMENARL KEELDRVSSI TSKYLGRPFT QMPPVPTMSM SSLDLSMGGM PGQQGHLGGP PSLDLDLLSG CSSGMPYQMP
201: APVTEMERPM MVDMATRAMD ELIRLAQAGD QIWVKGMPGD AREMLNVATY DSLFSKPGVA FRPPDMNVEG SRDSGLVFMS AVALVDVFMD TNKWMEFFPG
301: IVSKAQTVDV LVNGLGGRSE SLIMMYEELH IMTPVVPTRE LSFLRYCKQI EQGLWAIADV SLDGQRDAHY GMPSRSRRMP SGCLIADMSN GYSKVTWVEH
401: MEIEQMLPIN VLYRNLVLSG AAFGAHRWLA ALQRACERFA SVATLGVPHH DIAGVTPEGK RSMMKLSQRM VGSFCASLSS SPLQRWTLLS GTTDVSVRVS
501: THRSTDSGGQ PNGVVLSAAT SIWLPVPGDH VFAFVRDENA RSQWDVLSHG NQVQEVSRIP NGSNPGNCIS LLRGLNANQN SMLILQESCT DASGALVVYS
601: PIDIPAANVV MSGEDPSGIP LLPSGFAILP DGRPGSGAGA SSSVVLPLAS QPGCVVTVAF QILVSNLPSS RLNAESVATV NSLIGTTVQQ IKAALNCAGP
101: KNVICPNCGG PPVAEDFFDE QKLRMENARL KEELDRVSSI TSKYLGRPFT QMPPVPTMSM SSLDLSMGGM PGQQGHLGGP PSLDLDLLSG CSSGMPYQMP
201: APVTEMERPM MVDMATRAMD ELIRLAQAGD QIWVKGMPGD AREMLNVATY DSLFSKPGVA FRPPDMNVEG SRDSGLVFMS AVALVDVFMD TNKWMEFFPG
301: IVSKAQTVDV LVNGLGGRSE SLIMMYEELH IMTPVVPTRE LSFLRYCKQI EQGLWAIADV SLDGQRDAHY GMPSRSRRMP SGCLIADMSN GYSKVTWVEH
401: MEIEQMLPIN VLYRNLVLSG AAFGAHRWLA ALQRACERFA SVATLGVPHH DIAGVTPEGK RSMMKLSQRM VGSFCASLSS SPLQRWTLLS GTTDVSVRVS
501: THRSTDSGGQ PNGVVLSAAT SIWLPVPGDH VFAFVRDENA RSQWDVLSHG NQVQEVSRIP NGSNPGNCIS LLRGLNANQN SMLILQESCT DASGALVVYS
601: PIDIPAANVV MSGEDPSGIP LLPSGFAILP DGRPGSGAGA SSSVVLPLAS QPGCVVTVAF QILVSNLPSS RLNAESVATV NSLIGTTVQQ IKAALNCAGP
001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
Arabidopsis Description
HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.