Factsheet for Solyc03g098200.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g063150.2.1
Solyc02g085950.2.1
Solyc03g034220.2.1
Solyc08g076370.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73360.1	Solyc08g076370.2.1	AT4G17710.1	21798944
AT1G73360.1	Solyc02g063150.2.1	AT5G38420.1	21798944
AT1G73360.1	Solyc02g085950.2.1	AT5G38420.1	21798944
AT1G73360.1	Solyc03g034220.2.1	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0208100-00	Rice	nucleus	14.56	81.4
Solyc06g072310.2.1	Tomato	nucleus	80.17	80.61
VIT_17s0053g00780.t01	Wine grape	nucleus	76.56	77.75
KRH09477	Soybean	nucleus	74.06	74.37
KRH38939	Soybean	nucleus	74.34	74.24
KRH60596	Soybean	nucleus	71.01	71.81
KRH41898	Soybean	nucleus	71.01	71.01
AT1G73360.1	Thale cress	nucleus	63.94	63.85
AT1G17920.1	Thale cress	nucleus	60.33	63.32
Bra015996.1-P	Field mustard	nucleus	62.55	62.9
CDX96471	Canola	nucleus	62.55	62.81
CDX72984	Canola	nucleus	62.27	62.8
CDX68229	Canola	nucleus	61.16	62.73
CDX96744	Canola	nucleus	58.53	62.7
GSMUA_Achr10P...	Banana	nucleus	61.72	62.59
Bra003846.1-P	Field mustard	nucleus	61.16	62.55
CDY11109	Canola	nucleus	61.16	62.11
Bra016578.1-P	Field mustard	nucleus	58.53	61.7
CDY26204	Canola	nucleus	54.09	61.22
Os06t0207966-00	Rice	plastid	22.33	61.22
CDX83884	Canola	nucleus	57.98	61.02
Zm00001d052133_P001	Maize	nucleus	58.95	60.89
TraesCS6A01G324500.1	Wheat	nucleus	57.7	60.73
EES05874	Sorghum	nucleus	59.5	60.68
CDY19185	Canola	nucleus	57.28	60.56
Zm00001d018225_P001	Maize	nucleus	58.11	60.55
TraesCS6D01G304300.1	Wheat	nucleus	57.42	60.44
GSMUA_Achr2P15140_001	Banana	nucleus	61.58	60.08
CDY26205	Canola	nucleus	57.42	60.0
GSMUA_Achr6P05990_001	Banana	nucleus	50.07	59.87
Bra025938.1-P	Field mustard	nucleus	57.28	59.51
TraesCS6B01G354900.3	Wheat	nucleus	57.28	59.25
GSMUA_Achr7P11310_001	Banana	nucleus	60.06	58.83
CDY42097	Canola	nucleus	42.16	58.8
Zm00001d044973_P001	Maize	nucleus	56.03	58.64
Zm00001d037140_P004	Maize	nucleus	55.62	58.37
EER89393	Sorghum	nucleus	56.31	58.0
GSMUA_Achr10P...	Banana	nucleus	52.57	55.57
TraesCS7A01G167900.1	Wheat	nucleus	51.32	51.03
TraesCS7B01G072700.1	Wheat	nucleus	51.59	50.96
TraesCS7D01G168700.1	Wheat	nucleus	51.73	50.96
Solyc03g031760.2.1	Tomato	cytosol	43.0	49.28
Solyc10g005330.2.1	Tomato	nucleus	47.71	48.31
Solyc02g080260.2.1	Tomato	nucleus	47.43	45.54
Solyc01g091630.2.1	Tomato	nucleus	51.32	45.07
Solyc11g022410.1.1	Tomato	extracellular	4.3	41.89
Solyc09g057530.1.1	Tomato	cytosol	7.91	41.61
Solyc08g076370.2.1	Tomato	nucleus	47.57	40.74
Solyc11g022430.1.1	Tomato	cytosol	9.85	39.66
Solyc09g066070.2.1	Tomato	cytosol	23.58	39.44
Solyc12g005830.1.1	Tomato	nucleus	39.94	38.35
Solyc09g060140.2.1	Tomato	mitochondrion	19.56	38.32
Solyc04g025740.1.1	Tomato	nucleus	7.77	37.84
Solyc11g011940.1.1	Tomato	nucleus	37.17	37.38
Solyc09g066050.2.1	Tomato	cytosol	28.57	37.25
Solyc03g120620.2.1	Tomato	nucleus	39.94	37.16
Solyc07g041850.1.1	Tomato	nucleus	34.81	36.91
Solyc06g035940.2.1	Tomato	nucleus	34.54	36.83
Solyc09g060170.1.1	Tomato	cytosol	17.48	36.63
Solyc09g057540.2.1	Tomato	cytosol	25.24	36.62
Solyc10g018030.1.1	Tomato	cytosol	20.8	36.32
Solyc09g066030.1.1	Tomato	nucleus	35.92	35.82
Solyc06g050160.2.1	Tomato	nucleus	32.18	35.53
Solyc08g062510.2.1	Tomato	nucleus	32.18	35.53
Solyc09g060130.1.1	Tomato	cytosol	21.64	35.14
Solyc03g026070.2.1	Tomato	nucleus	39.25	35.07
Solyc04g025490.1.1	Tomato	cytosol	11.65	34.71
Solyc07g037910.1.1	Tomato	cytosol	10.12	34.6
Solyc07g026560.1.1	Tomato	cytosol	22.61	34.46
Solyc10g018020.1.1	Tomato	extracellular	15.95	34.23
Solyc07g026570.1.1	Tomato	nucleus	6.66	34.04
Solyc10g018000.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	32.87	33.91
Solyc05g015030.1.1	Tomato	cytosol	21.91	33.33
Solyc11g022420.1.1	Tomato	cytosol	22.05	33.19
Solyc04g025480.1.1	Tomato	cytosol	29.54	32.52
Solyc08g062520.2.1	Tomato	cytosol	22.75	32.09
Solyc10g006420.2.1	Tomato	cytosol	22.88	31.31
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	10.54	26.57

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR002913	InterPro:IPR023393	UniProt:K4BJN5	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027
PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF236	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	EnsemblPlantsGene:Solyc03g098200.2	EnsemblPlants:Solyc03g098200.2.1
UniParc:UPI0002768778	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:-:60543697..60546844

Molecular Weight (calculated)

79363.3 Da

IEP (calculated)

6.701

GRAVY (calculated)

-0.305

Length

721 amino acids

Sequence
(BLAST)

001: MEYVGTGGGG GTSSGGGADP HDGSDSHRRK KRYHRHTANQ IQKLEAIFKE CPHPDEKTRL QLSRDLALAP RQIKFWFQNR RTQMKAQHER ADNCALRAEN
101: DKIRCENIAI REALKNVICP SCGGPPVTED SYFDEQKLRI ENMQLKEELD KVSSIAAKYI GRPISQLPPV QPIHLSSLDL SMSSFIGHGP NSLDLDLDLL
201: PGSSSNMPSL AYATLNLSDM DKSLIADIAG NAMEELIRLV QTSEPLWMKS TIDGRDVLNF DSYDRVFPRA NSHLKNPNVR IEASRDSGVV TMNGLALVEV
301: FMDANKWHEF FPTIVSKART LEVISSGVMG SRTSTLQLMY EELQVLSPLV PTRQLYFLRF CQQIEQGSWA IVDVSYDITQ ENQFSSTACK VHRLPSGCLI
401: QDMPNGYSKV TWVEHVEVEE KGLIHRLYRD LIHSGLAFGA ERWVGTLQRV CERHACLMVN SNPSHDHGGA IPSPDGKRSM MKLARRMVSN FCASVNPSNG
501: HQWNTISGLN EFEVRATLQK CTDPGQPNGV VISAAATIWL PIPPQQVFNF FRDERTRPQW DVLSNQNPVQ EVAHIANGSH SGNCISVLRA YNTSQNNMLI
601: LQESCIDSSG ALVVYSPVDI PAINIAMSGE DPTYIPLLPS GFTISPDGRQ LDTDAASCSS SSNASTIGGG RSGGSLITVV FQILVSSLPS AKMSPESVNT
701: VNNLIGSTVH QIKSALNCST S

Best Arabidopsis Sequence Match ( AT1G73360.1 )
(BLAST)

001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA

Arabidopsis Description

HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.