Factsheet for Solyc12g005830.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400094124	Potato	nucleus	82.16	81.61
Solyc03g031760.2.1	Tomato	cytosol	47.27	56.44
Solyc10g005330.2.1	Tomato	nucleus	51.93	54.78
Solyc02g080260.2.1	Tomato	nucleus	53.13	53.13
Solyc07g041850.1.1	Tomato	nucleus	40.21	44.41
CDY19129	Canola	nucleus	42.88	44.29
Bra021779.1-P	Field mustard	nucleus	42.34	43.68
CDY15339	Canola	nucleus	42.21	43.37
CDY48272	Canola	nucleus	40.48	43.18
Bra005588.1-P	Field mustard	nucleus	40.35	43.04
CDY12213	Canola	nucleus	40.75	42.98
AT2G32370.1	Thale cress	nucleus	41.28	42.76
Solyc01g091630.2.1	Tomato	nucleus	45.27	41.41
CDY30748	Canola	endoplasmic reticulum	31.96	40.89
Solyc03g098200.2.1	Tomato	nucleus	38.35	39.94
Solyc06g072310.2.1	Tomato	nucleus	37.55	39.33
Solyc03g120620.2.1	Tomato	nucleus	37.55	36.39
Solyc03g026070.2.1	Tomato	nucleus	37.68	35.07
Solyc08g076370.2.1	Tomato	nucleus	39.01	34.8
Solyc10g006420.2.1	Tomato	cytosol	24.1	34.35
Solyc06g050160.2.1	Tomato	nucleus	29.43	33.84
Solyc04g025740.1.1	Tomato	nucleus	6.66	33.78
Solyc09g066070.2.1	Tomato	cytosol	19.17	33.41
Solyc06g035940.2.1	Tomato	nucleus	29.96	33.28
Solyc09g057530.1.1	Tomato	cytosol	5.99	32.85
Solyc09g060130.1.1	Tomato	cytosol	18.77	31.76
Solyc09g060170.1.1	Tomato	cytosol	14.51	31.69
Solyc04g025490.1.1	Tomato	cytosol	10.12	31.41
Solyc09g057540.2.1	Tomato	cytosol	20.77	31.39
Solyc09g060140.2.1	Tomato	mitochondrion	15.31	31.25
Solyc09g066030.1.1	Tomato	nucleus	29.69	30.84
Solyc11g011940.1.1	Tomato	nucleus	29.16	30.54
Solyc07g026570.1.1	Tomato	nucleus	5.73	30.5
Solyc08g062510.2.1	Tomato	nucleus	26.5	30.47
Solyc09g066050.2.1	Tomato	cytosol	21.97	29.84
Solyc10g018020.1.1	Tomato	extracellular	13.32	29.76
Solyc05g015030.1.1	Tomato	cytosol	18.77	29.75
Solyc11g022410.1.1	Tomato	extracellular	2.93	29.73
Solyc11g022430.1.1	Tomato	cytosol	7.06	29.61
Solyc10g018030.1.1	Tomato	cytosol	16.25	29.54
Solyc10g018000.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	27.43	29.47
Solyc11g022420.1.1	Tomato	cytosol	18.64	29.23
Solyc07g026560.1.1	Tomato	cytosol	17.84	28.33
Solyc04g025480.1.1	Tomato	cytosol	24.23	27.79
Solyc08g062520.2.1	Tomato	cytosol	18.24	26.81
Solyc07g037910.1.1	Tomato	cytosol	7.46	26.54

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913
UniProt:K4DBC1	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF349	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961
InterPro:START_lipid-bd_dom	EnsemblPlantsGene:Solyc12g005830.1	EnsemblPlants:Solyc12g005830.1.1	UniParc:UPI000276A4A4	SEG:seg	:

Description

No Description!

Coordinates

chr12:+:468371..472633

Molecular Weight (calculated)

82743.7 Da

IEP (calculated)

4.958

GRAVY (calculated)

-0.263

Length

751 amino acids

Sequence
(BLAST)

001: MPAVHSRPAN LVPPLVENDG TNDTEIPLGQ PSNMMDNQPN SMENVTNTLD TSIGQDLGGG DDDHNDDQEE GETATGKRKR YHRHTQHQIQ ELEAYFKDCP
101: HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT QMKNQLERHE NTHLRIEIER MKSEMLRLKE ALGNLSCPTC GGHRINIGDL SFEERQLRSE NARLKEEIER
201: ISSMAGRVVG KSVFPNNNNG YISAPPVDFG VLPAYSMPQR VDGNGGFEDV PIMSPMIIPP ISEIEKPFII ELVMSAMDEF VQMAYIQEPL WSPSIENAAF
301: MLNEDEYFRV FPRGIGPRPI GFVTEATRDS SIVIMNKLDL VQILMNVNHW ASIFSGIVSR ASCVDVISTG GAGNPNGVIQ VILAETQVAS PQVPTREFYF
401: ARYCKLRVDG TWAIVDVSLD QLRAGPALRS RKRPSGCLIE DAPNGCSKVT WVEHVEVDAS TVHTIYKPLV SSGLAFGAKR WLAALDRQCD RIASVLVTPT
501: LNNDDMLLTT EESRKNVLKL AERMINCFSS GVSATVGNQW TTVSAGNGTD ENVRIMTRKT VGDPSRPPGI VLSAATSFWL PIAPKTVFDY LRNENTRIEW
601: DILSNGSPLQ EIVQIANGTQ TGNCVSLLRM IGENDNQSNI VILQENSTDP TGSYVIYAPV EICTMNTILN GGDPEHVSLL PSGFAILPDG PPGVRGTYNH
701: GSGGSLLTVA FQILVEFVPV ANISLGSVAT VNNLIACTIE RIKAALLPQP T

Best Arabidopsis Sequence Match ( AT1G05230.8 )
(BLAST)

001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A

Arabidopsis Description

HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.