Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g062520.2.1 | Tomato | cytosol | 76.88 | 98.24 |
| Solyc09g060170.1.1 | Tomato | cytosol | 48.55 | 92.15 |
| Solyc09g060130.1.1 | Tomato | cytosol | 62.17 | 91.44 |
| Solyc09g057530.1.1 | Tomato | cytosol | 18.99 | 90.51 |
| Solyc05g015030.1.1 | Tomato | cytosol | 64.93 | 89.45 |
| Solyc09g060140.2.1 | Tomato | mitochondrion | 49.46 | 87.77 |
| Solyc11g022420.1.1 | Tomato | cytosol | 64.01 | 87.27 |
| Solyc09g066070.2.1 | Tomato | cytosol | 56.81 | 86.08 |
| Solyc09g057540.2.1 | Tomato | cytosol | 63.4 | 83.3 |
| Solyc11g022410.1.1 | Tomato | extracellular | 8.42 | 74.32 |
| Solyc09g066030.1.1 | Tomato | nucleus | 81.32 | 73.44 |
| Solyc09g066050.2.1 | Tomato | cytosol | 58.96 | 69.62 |
| Solyc11g022430.1.1 | Tomato | cytosol | 18.22 | 66.48 |
| Solyc11g011940.1.1 | Tomato | nucleus | 70.9 | 64.57 |
| Solyc10g018030.1.1 | Tomato | cytosol | 40.12 | 63.44 |
| Solyc10g018020.1.1 | Tomato | extracellular | 30.78 | 59.82 |
| Solyc07g026560.1.1 | Tomato | cytosol | 42.42 | 58.56 |
| Solyc04g025490.1.1 | Tomato | cytosol | 21.44 | 57.85 |
| Solyc07g037910.1.1 | Tomato | cytosol | 17.76 | 54.98 |
| Solyc04g025480.1.1 | Tomato | cytosol | 52.83 | 52.67 |
| Solyc10g018000.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 51.3 | 47.93 |
| CDY62389 | Canola | cytosol | 28.48 | 38.04 |
| CDY69499 | Canola | cytosol | 17.3 | 37.17 |
| VIT_04s0079g00480.t01 | Wine grape | nucleus | 39.66 | 36.27 |
| KRH36827 | Soybean | nucleus | 38.59 | 35.54 |
| KRH11810 | Soybean | nucleus | 38.13 | 34.92 |
| GSMUA_Achr10P... | Banana | nucleus | 36.29 | 33.33 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 34.92 | 33.28 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 34.92 | 33.28 |
| CDX85461 | Canola | cytosol | 35.68 | 33.05 |
| Bra023611.1-P | Field mustard | nucleus | 35.68 | 33.05 |
| Zm00001d018225_P001 | Maize | nucleus | 34.76 | 32.8 |
| Zm00001d044973_P001 | Maize | nucleus | 34.61 | 32.8 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 34.92 | 32.71 |
| AT3G03260.1 | Thale cress | nucleus | 34.92 | 32.62 |
| EER89393 | Sorghum | nucleus | 34.92 | 32.57 |
| CDY53691 | Canola | nucleus | 35.38 | 32.54 |
| Bra003213.1-P | Field mustard | nucleus | 35.38 | 32.54 |
| Zm00001d052133_P001 | Maize | nucleus | 34.76 | 32.52 |
| Bra008562.1-P | Field mustard | cytosol, nucleus, plastid | 35.99 | 32.5 |
| AT1G34650.1 | Thale cress | nucleus | 35.22 | 32.49 |
| Os06t0207966-00 | Rice | plastid | 13.02 | 32.32 |
| Zm00001d037140_P004 | Maize | nucleus | 34.0 | 32.31 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 36.29 | 32.2 |
| Solyc03g098200.2.1 | Tomato | nucleus | 35.53 | 32.18 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 29.71 | 32.17 |
| GSMUA_Achr10P... | Banana | nucleus | 33.54 | 32.11 |
| EES05874 | Sorghum | nucleus | 34.61 | 31.97 |
| KRH36826 | Soybean | nucleus | 34.46 | 31.56 |
| CDY02713 | Canola | nucleus | 35.68 | 31.53 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 35.53 | 31.39 |
| Solyc06g072310.2.1 | Tomato | nucleus | 34.46 | 31.38 |
| CDY16938 | Canola | nucleus | 31.55 | 31.21 |
| AT5G17320.1 | Thale cress | nucleus | 33.69 | 30.64 |
| Bra032003.1-P | Field mustard | nucleus | 32.31 | 30.62 |
| CDY42301 | Canola | nucleus | 32.31 | 30.58 |
| Bra020066.1-P | Field mustard | nucleus | 31.85 | 30.5 |
| CDY43137 | Canola | nucleus | 32.16 | 30.48 |
| CDY67945 | Canola | nucleus | 31.7 | 30.04 |
| CDY44946 | Canola | nucleus | 29.25 | 29.48 |
| Os06t0208100-00 | Rice | nucleus | 5.82 | 29.46 |
| CDY49937 | Canola | nucleus | 31.09 | 29.25 |
| Solyc10g005330.2.1 | Tomato | nucleus | 31.7 | 29.07 |
| Bra021363.1-P | Field mustard | nucleus | 32.16 | 28.89 |
| CDY21211 | Canola | nucleus | 30.63 | 28.82 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 31.85 | 28.42 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 31.55 | 28.41 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 31.7 | 28.36 |
| Solyc03g031760.2.1 | Tomato | cytosol | 26.65 | 27.66 |
| KRH42428 | Soybean | nucleus | 31.24 | 26.95 |
| Solyc02g080260.2.1 | Tomato | nucleus | 30.93 | 26.9 |
| Solyc01g091630.2.1 | Tomato | nucleus | 33.54 | 26.67 |
| Solyc12g005830.1.1 | Tomato | nucleus | 30.47 | 26.5 |
| KRH42429 | Soybean | cytosol | 28.94 | 25.89 |
| Solyc08g076370.2.1 | Tomato | nucleus | 32.92 | 25.53 |
| Solyc10g006420.2.1 | Tomato | cytosol | 20.52 | 25.43 |
| Solyc07g041850.1.1 | Tomato | nucleus | 26.34 | 25.29 |
| Solyc03g120620.2.1 | Tomato | nucleus | 29.1 | 24.52 |
| Solyc06g050160.2.1 | Tomato | nucleus | 24.5 | 24.5 |
| Solyc06g035940.2.1 | Tomato | nucleus | 24.81 | 23.96 |
| Solyc03g026070.2.1 | Tomato | nucleus | 29.4 | 23.79 |
| Solyc07g026570.1.1 | Tomato | nucleus | 4.75 | 21.99 |
| Solyc04g025740.1.1 | Tomato | nucleus | 4.59 | 20.27 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008289 | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 | UniProt:K4CL39 | PFAM:PF00046 | PFAM:PF01852 |
| PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF504 | SMART:SM00234 | SMART:SM00389 |
| SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom | EnsemblPlantsGene:Solyc08g062510.2 | EnsemblPlants:Solyc08g062510.2.1 | UniParc:UPI000276B0D0 |
Description
No Description!
Coordinates
chr8:-:51173180..51184575
Molecular Weight (calculated)
73932.6 Da
IEP (calculated)
6.125
GRAVY (calculated)
-0.419
Length
653 amino acids
Sequence
(BLAST)
(BLAST)
001: MTDSGEEPAG ESSNSQKRSE SHGQYHKHSM EQIQILDAFF KKCPHPDEDQ QKQLGSEAGL DHKQVKFWFQ NRRAQAKDEK VSSLISHVFG RPFVMDSNLA
101: PQISTLGSPS NSSDGSLLNE DTRGSPIIYP PLRQENNQNS NNFHAHSMIS QSPQEHDECN HDSRQQTIMF ETVVASMNEM VELWKMNDPF WVDSSSDRRC
201: FIHHEIYGRN FSNQVLPPQT STCRIESSKD CGIVSMTAVE LIHNFLDPVK WMNLFPTIVT KAKTIEVVDS GTWGGSMQLM YEKLHILSPL VEAREFLFIR
301: GCRQLDATTW IMVDISYDIF NDIQSGVPSY SWKFPSGCAI QDMGNGQSKV TWVEHVQVYE KYHVNHIFRD LLCDREAYGA KRWIVTLQRM CERFNFQMGS
401: TYPNRHDSKG VFHDPEGLKN TIQVSQRMVK KFFEILSMTD NHGDFSISPQ LNRGDRISIV KNEETIQPKG FIAIATTSLW LPLSFQDVFS FFNDYKTRNQ
501: WDILTGGNNV IELDRVLTGT FPGNNITVIQ PYNMHKEMLV LEETSIDEMG AFLVYAPIDL RAINSIVNGG DATKVPFLPS GIIISPDGRL SSNRDSTPNA
601: QNGSILTVTF QIMICGNNNP TSRQQKMEVV GSVHGVLSAT ILRIKEALGC SDL
101: PQISTLGSPS NSSDGSLLNE DTRGSPIIYP PLRQENNQNS NNFHAHSMIS QSPQEHDECN HDSRQQTIMF ETVVASMNEM VELWKMNDPF WVDSSSDRRC
201: FIHHEIYGRN FSNQVLPPQT STCRIESSKD CGIVSMTAVE LIHNFLDPVK WMNLFPTIVT KAKTIEVVDS GTWGGSMQLM YEKLHILSPL VEAREFLFIR
301: GCRQLDATTW IMVDISYDIF NDIQSGVPSY SWKFPSGCAI QDMGNGQSKV TWVEHVQVYE KYHVNHIFRD LLCDREAYGA KRWIVTLQRM CERFNFQMGS
401: TYPNRHDSKG VFHDPEGLKN TIQVSQRMVK KFFEILSMTD NHGDFSISPQ LNRGDRISIV KNEETIQPKG FIAIATTSLW LPLSFQDVFS FFNDYKTRNQ
501: WDILTGGNNV IELDRVLTGT FPGNNITVIQ PYNMHKEMLV LEETSIDEMG AFLVYAPIDL RAINSIVNGG DATKVPFLPS GIIISPDGRL SSNRDSTPNA
601: QNGSILTVTF QIMICGNNNP TSRQQKMEVV GSVHGVLSAT ILRIKEALGC SDL
001: MEFLGDSQNH DSSETEKKNK KKKRFHRHTP HQIQRLESTF NECQHPDEKQ RNQLSRELGL APRQIKFWFQ NRRTQKKAQH ERADNCALKE ENDKIRCENI
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
Arabidopsis Description
HDG12Uncharacterized protein At1g17920 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.