Factsheet for Bra008562.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69499	Canola	cytosol	41.22	98.03
Bra003213.1-P	Field mustard	nucleus	80.36	81.83
Bra023611.1-P	Field mustard	nucleus	68.19	69.93
AT1G34650.1	Thale cress	nucleus	61.83	63.14
AT5G17320.1	Thale cress	nucleus	59.89	60.31
Os06t0208100-00	Rice	nucleus	10.37	58.14
Bra021363.1-P	Field mustard	nucleus	47.03	46.77
Bra032003.1-P	Field mustard	nucleus	44.4	46.59
Bra020066.1-P	Field mustard	nucleus	43.85	46.48
VIT_04s0079g00480.t01	Wine grape	nucleus	42.05	42.58
Solyc09g057530.1.1	Tomato	cytosol	8.02	42.34
Solyc09g066070.2.1	Tomato	cytosol	25.17	42.23
PGSC0003DMT400051268	Potato	cytosol	27.8	40.28
PGSC0003DMT400085057	Potato	cytosol	26.56	40.17
PGSC0003DMT400038820	Potato	extracellular	20.19	40.11
Solyc10g018030.1.1	Tomato	cytosol	22.27	38.98
Zm00001d018225_P001	Maize	nucleus	37.21	38.87
KRH11810	Soybean	nucleus	38.04	38.57
TraesCS6A01G324500.1	Wheat	nucleus	36.51	38.54
TraesCS6D01G304300.1	Wheat	nucleus	36.51	38.54
Solyc09g060130.1.1	Tomato	cytosol	23.65	38.51
Solyc07g026560.1.1	Tomato	cytosol	25.17	38.48
PGSC0003DMT400034503	Potato	cytosol, nucleus	36.24	38.47
Zm00001d052133_P001	Maize	nucleus	36.93	38.25
Solyc09g057540.2.1	Tomato	cytosol	26.28	38.23
KRH36827	Soybean	nucleus	37.34	38.08
Zm00001d044973_P001	Maize	nucleus	35.96	37.74
TraesCS6B01G354900.3	Wheat	nucleus	36.38	37.73
Bra016578.1-P	Field mustard	nucleus	35.68	37.72
Solyc11g011940.1.1	Tomato	nucleus	37.34	37.66
EES05874	Sorghum	nucleus	36.79	37.62
Solyc04g025490.1.1	Tomato	cytosol	12.59	37.6
Solyc11g022420.1.1	Tomato	cytosol	24.9	37.58
GSMUA_Achr10P...	Banana	nucleus	36.93	37.55
Zm00001d037140_P004	Maize	nucleus	35.55	37.41
GSMUA_Achr10P...	Banana	nucleus	35.13	37.24
Solyc09g060140.2.1	Tomato	mitochondrion	18.95	37.23
Solyc09g060170.1.1	Tomato	cytosol	17.7	37.21
Solyc09g066050.2.1	Tomato	cytosol	28.35	37.07
Solyc09g066030.1.1	Tomato	nucleus	37.07	37.07
Bra025938.1-P	Field mustard	nucleus	35.55	37.03
PGSC0003DMT400051266	Potato	cytosol	19.92	37.02
GSMUA_Achr6P05990_001	Banana	nucleus	30.84	36.98
Solyc07g037910.1.1	Tomato	cytosol	10.79	36.97
EER89393	Sorghum	nucleus	35.55	36.71
GSMUA_Achr2P15140_001	Banana	nucleus	37.48	36.67
Solyc05g015030.1.1	Tomato	cytosol	23.79	36.29
Solyc10g018020.1.1	Tomato	extracellular	16.74	36.01
Solyc08g062510.2.1	Tomato	nucleus	32.5	35.99
Bra000960.1-P	Field mustard	extracellular	5.81	35.9
GSMUA_Achr7P11310_001	Banana	nucleus	36.51	35.87
KRH36826	Soybean	nucleus	35.27	35.76
Bra003846.1-P	Field mustard	nucleus	34.44	35.32
Bra015996.1-P	Field mustard	nucleus	34.44	34.73
Bra000807.1-P	Field mustard	nucleus	28.35	34.34
Solyc07g026570.1.1	Tomato	nucleus	6.64	34.04
Bra020872.1-P	Field mustard	nucleus	34.85	33.69
Solyc10g018000.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	32.5	33.62
Solyc08g062520.2.1	Tomato	cytosol	23.65	33.46
PGSC0003DMT400036411	Potato	nucleus	24.2	33.33
Bra015401.1-P	Field mustard	nucleus	33.06	33.19
Bra029527.1-P	Field mustard	nucleus	34.16	33.15
TraesCS7A01G167900.1	Wheat	nucleus	33.2	33.1
TraesCS7B01G072700.1	Wheat	nucleus	32.92	32.6
Bra032478.1-P	Field mustard	nucleus	32.37	32.55
Solyc04g025480.1.1	Tomato	cytosol	29.46	32.52
Bra038757.1-P	Field mustard	nucleus	32.5	32.41
TraesCS7D01G168700.1	Wheat	nucleus	32.78	32.38
Bra028295.1-P	Field mustard	nucleus	30.29	32.11
Os06t0207966-00	Rice	plastid	11.48	31.56
Bra013556.1-P	Field mustard	nucleus	30.01	31.45
Bra037355.1-P	Field mustard	nucleus	33.61	30.76
Bra005588.1-P	Field mustard	nucleus	29.74	30.54
Bra003439.1-P	Field mustard	nucleus	33.06	30.45
KRH42428	Soybean	nucleus	31.12	29.72
Bra004934.1-P	Field mustard	nucleus	32.09	29.52
Bra003535.1-P	Field mustard	nucleus	29.88	28.8
Bra021779.1-P	Field mustard	nucleus	28.77	28.57
KRH42429	Soybean	cytosol	27.52	27.26
Bra024984.1-P	Field mustard	nucleus	29.6	26.92
Bra017519.1-P	Field mustard	nucleus	30.01	26.59
Bra021035.1-P	Field mustard	nucleus	26.97	26.57
Bra013898.1-P	Field mustard	nucleus	19.92	23.11
TraesCSU01G150000.1	Wheat	nucleus	6.78	22.48
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	8.02	20.28
TraesCSU01G244000.1	Wheat	nucleus	5.67	19.9
HORVU3Hr1G022170.1	Barley	cytosol	1.94	11.76

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	Gene3D:3.30.530.20	EnsemblPlantsGene:Bra008562	EnsemblPlants:Bra008562.1	EnsemblPlants:Bra008562.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:M4CWG5	PFAM:PF00046	PFAM:PF01852
PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF504	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI00025444CB	SEG:seg

Description

AT1G34650 (E=3e-233) HDG10 | HDG10 (HOMEODOMAIN GLABROUS 10); DNA binding / transcription factor

Coordinates

chrA10:+:12827422..12831967

Molecular Weight (calculated)

81389.1 Da

IEP (calculated)

7.393

GRAVY (calculated)

-0.436

Length

723 amino acids

Sequence
(BLAST)

001: MASSRDSSSS DEDETSFNTS DGDKKNYNRH SNHQIQRLEA YFKECHHPDD SQRLKLGEEL KLKPKQIKFW FQNKRTQAKT QSEKADNAAL RTENMKIRRE
101: NEALQAALNT VTCPPCGGPR PGKGERTLYL QNLRTHNTYL REERDRLSSL VNKSEGHSRP SFNALAYHHG PSLYASASNN PHVTYGSSSN YRVEPSSLVK
201: EPYSRERINI GQPPQPRNPI QLQRFQTLSQ MEKVTMTEAM VTAMTEVITL IQTEESMWIQ SSIDGRLVID QKNYEKTFTN PSHFKSPSSR IESSKEVAVI
301: PMDAKNLVNM LLDTEKWANL FSTIVSEAKT IHVLESMDPR RNFSKLMYEQ LHILSPLLPP REFMILRCCQ QLEEDVWVIA DVSYHQVAFE FEFETPACVK
401: RPSGCLIQAL PNGHSKVTWM EHVEVNDKVR SHRIYRDLLC GGFGYGARRW TATLERMCER LSLYSISGLP TTDFPGVVDT MDGRKRVMDL GERMLKNFAW
501: ILKMPEKSGF SQQTATNSSG VRISVRVNEE VGQPAGLIVC AGLSLCLPLA PLQVYSFLKN LEVRHQWDVL CQASPVTEVA RFVTGTDNKN CVNILKPSSA
601: TENGALMIIQ DSFIDALGGM VVYAPVDLRT AHAAFLGNVD PSSIPILPSG FVISRDGRPP SAAELDGGLD NCKTLLTVAF QILVTGPAMF EEDQMNEWTT
701: KVHTLLSSTI RRVKGMLNCD DAQ

Best Arabidopsis Sequence Match ( AT1G34650.1 )
(BLAST)

001: MDSSHNDSSS DEEGIDSNNR RHHSNHQVQR LEAFFHECPH PDDSQRRQLG NELNLKHKQI KFWFQNRRTQ ARIHNEKADN IALRVENMKI RCVNEAMEKA
101: LETVLCPPCG GPHGKEEQLC NLQKLRTKNV ILKTEYERLS SYLTKHGGYS IPSVDALPDL HGPSTYGSTS NNRPASYGSS SNHLPQQSSL LRRPFTRELI
201: NTTPLPKPVL LQHFQQLSQL EKNRMFEIAK NAVAEVMSLI QMEHSMWIKS TIDGRAIIDP GNYKRYFTKN SHLKSRSALQ SHHESSMEVV VVQMDARNLV
301: DMFLNTEKWA RLFPTIVTEA KTIHVLDSMD HPRQTFSRVV YEQLHILSPL VLPREFIILR TCQQMKEDLW LIADVSCYLQ NVEFESTAPI CTKRPSGVLI
401: QALPHGRSKV TWIEHVEVTD KVWPHQLYRD LLYGGFGYGA RRWTATLQRM CERLSLYSMT DFPPTDYPGV VKTIEGRRSV MSLGERMLKN FAWIMKMSDK
501: LDLPQQSGAN NSGVRISVRT NTEAGQPPGL IVCAGSSLSL PLPPLQVYDF LRNLEVRHQW DVHCQGNPVT EAARFVTGPD QKNNVTFLQP SSVGEYKLMI
601: LQDGFIDALG GMVVYAPMNL NTAYSAISGQ VDPSTIPILP SGFIISRDSH PSSSEVDGGS MTLLTLAFQI FVTGPSYYTD LNLKDSATTV NTLVSSAVQR
701: IKAMLNCE

Arabidopsis Description

HDG10Homeobox-leucine zipper protein HDG10 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9Z0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.