Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g022410.1.1 | Tomato | extracellular | 11.6 | 74.32 |
| Solyc09g057530.1.1 | Tomato | cytosol | 19.2 | 66.42 |
| Solyc08g062510.2.1 | Tomato | nucleus | 89.45 | 64.93 |
| Solyc11g022430.1.1 | Tomato | cytosol | 23.84 | 63.13 |
| Solyc11g022420.1.1 | Tomato | cytosol | 60.76 | 60.13 |
| Solyc09g060130.1.1 | Tomato | cytosol | 54.64 | 58.33 |
| Solyc08g062520.2.1 | Tomato | cytosol | 61.81 | 57.34 |
| Solyc07g037910.1.1 | Tomato | cytosol | 23.84 | 53.55 |
| Solyc09g066030.1.1 | Tomato | nucleus | 81.01 | 53.11 |
| Solyc09g066070.2.1 | Tomato | cytosol | 47.05 | 51.74 |
| Solyc09g066050.2.1 | Tomato | cytosol | 57.17 | 49.01 |
| Solyc09g060170.1.1 | Tomato | cytosol | 35.23 | 48.55 |
| Solyc09g057540.2.1 | Tomato | cytosol | 50.63 | 48.29 |
| Solyc11g011940.1.1 | Tomato | nucleus | 72.78 | 48.12 |
| Solyc10g018030.1.1 | Tomato | cytosol | 39.66 | 45.52 |
| Solyc04g025490.1.1 | Tomato | cytosol | 22.57 | 44.21 |
| Solyc09g060140.2.1 | Tomato | mitochondrion | 33.54 | 43.21 |
| Solyc07g026560.1.1 | Tomato | cytosol | 40.51 | 40.59 |
| Solyc10g018000.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 53.38 | 36.19 |
| Solyc04g025480.1.1 | Tomato | cytosol | 50.0 | 36.18 |
| Solyc10g018020.1.1 | Tomato | extracellular | 24.05 | 33.93 |
| Os06t0208100-00 | Rice | nucleus | 8.44 | 31.01 |
| VIT_04s0079g00480.t01 | Wine grape | nucleus | 39.87 | 26.47 |
| CDY62389 | Canola | cytosol | 27.0 | 26.18 |
| CDY16938 | Canola | nucleus | 36.29 | 26.06 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 33.12 | 26.04 |
| KRH36827 | Soybean | nucleus | 38.19 | 25.53 |
| KRH11810 | Soybean | nucleus | 38.19 | 25.39 |
| CDX85461 | Canola | cytosol | 36.5 | 24.54 |
| Bra023611.1-P | Field mustard | nucleus | 36.5 | 24.54 |
| CDY53691 | Canola | nucleus | 36.5 | 24.37 |
| Bra003213.1-P | Field mustard | nucleus | 36.5 | 24.37 |
| AT3G03260.1 | Thale cress | nucleus | 35.87 | 24.32 |
| Bra008562.1-P | Field mustard | cytosol, nucleus, plastid | 36.29 | 23.79 |
| CDY44946 | Canola | nucleus | 32.49 | 23.77 |
| AT1G34650.1 | Thale cress | nucleus | 35.02 | 23.45 |
| GSMUA_Achr10P... | Banana | nucleus | 35.02 | 23.35 |
| CDY02713 | Canola | nucleus | 36.29 | 23.27 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 33.33 | 23.07 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 33.33 | 23.07 |
| GSMUA_Achr10P... | Banana | nucleus | 33.12 | 23.02 |
| Zm00001d037140_P004 | Maize | nucleus | 33.33 | 23.0 |
| Zm00001d018225_P001 | Maize | nucleus | 33.54 | 22.98 |
| Zm00001d044973_P001 | Maize | nucleus | 33.33 | 22.93 |
| CDY42301 | Canola | nucleus | 33.33 | 22.9 |
| KRH36826 | Soybean | nucleus | 34.39 | 22.86 |
| EER89393 | Sorghum | nucleus | 33.76 | 22.86 |
| Bra020066.1-P | Field mustard | nucleus | 32.7 | 22.73 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 33.33 | 22.67 |
| Bra032003.1-P | Field mustard | nucleus | 32.7 | 22.5 |
| CDY43137 | Canola | nucleus | 32.7 | 22.5 |
| Zm00001d052133_P001 | Maize | nucleus | 33.12 | 22.49 |
| EES05874 | Sorghum | nucleus | 33.54 | 22.49 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 34.81 | 22.42 |
| CDY67945 | Canola | nucleus | 32.49 | 22.35 |
| AT5G17320.1 | Thale cress | nucleus | 33.76 | 22.28 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 34.6 | 22.19 |
| Solyc07g026570.1.1 | Tomato | nucleus | 6.54 | 21.99 |
| Solyc03g098200.2.1 | Tomato | nucleus | 33.33 | 21.91 |
| CDY49937 | Canola | nucleus | 31.65 | 21.61 |
| Bra021363.1-P | Field mustard | nucleus | 32.91 | 21.46 |
| CDY21211 | Canola | nucleus | 30.8 | 21.04 |
| Solyc06g072310.2.1 | Tomato | nucleus | 31.65 | 20.92 |
| Solyc10g005330.2.1 | Tomato | nucleus | 31.01 | 20.65 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 30.59 | 19.86 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 30.59 | 19.81 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 30.17 | 19.72 |
| KRH42428 | Soybean | nucleus | 31.43 | 19.68 |
| Solyc04g025740.1.1 | Tomato | nucleus | 5.91 | 18.92 |
| Solyc12g005830.1.1 | Tomato | nucleus | 29.75 | 18.77 |
| Solyc08g076370.2.1 | Tomato | nucleus | 33.33 | 18.76 |
| Solyc02g080260.2.1 | Tomato | nucleus | 29.54 | 18.64 |
| Solyc01g091630.2.1 | Tomato | nucleus | 30.8 | 17.78 |
| CDY69499 | Canola | cytosol | 11.39 | 17.76 |
| Solyc03g031760.2.1 | Tomato | cytosol | 23.21 | 17.49 |
| KRH42429 | Soybean | cytosol | 26.58 | 17.26 |
| Solyc10g006420.2.1 | Tomato | cytosol | 18.78 | 16.89 |
| Solyc03g120620.2.1 | Tomato | nucleus | 27.43 | 16.77 |
| Solyc03g026070.2.1 | Tomato | nucleus | 27.43 | 16.11 |
| Solyc07g041850.1.1 | Tomato | nucleus | 23.0 | 16.03 |
| Solyc06g035940.2.1 | Tomato | nucleus | 22.78 | 15.98 |
| Solyc06g050160.2.1 | Tomato | nucleus | 21.94 | 15.93 |
| Os06t0207966-00 | Rice | plastid | 4.01 | 7.22 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | Gene3D:3.30.530.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008289 |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 | InterPro:IPR023393 | UniProt:K4BYM1 |
| PFAM:PF00046 | PFAM:PF01852 | PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF504 |
| SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START-like_dom_sf | InterPro:START_lipid-bd_dom |
| EnsemblPlantsGene:Solyc05g015030.1 | EnsemblPlants:Solyc05g015030.1.1 | UniParc:UPI00027668A4 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5:-:9590703..9599495
Molecular Weight (calculated)
54717.2 Da
IEP (calculated)
7.579
GRAVY (calculated)
-0.534
Length
474 amino acids
Sequence
(BLAST)
(BLAST)
001: MTDFGEEPAG ESSNLQKRSE RDGQYHKYSM EQIQRLDAFF KKCPHPDEDQ QKQLGREAGL DHMQVKFWFQ NRRAQAKDEK VSNLISHVLG RPFVMDSNFA
101: PQISTLGSSS NSSDGSLLNQ DICGSPIRYP PLRQEKNHKN SIVHAHSMIS PSPQEHDECH HDSRKQTIMF ETVVASMNEM VELWKMKDPF WVDSSSDRRC
201: FIHREIYGRK FSNQVLPPQT STGRIESSKD CGIVSMTAID LIHNFLDPVK YMNLFPTIVT KAKTIEVLDS GTWGGSTQLM YEKLHILSPL VEAREFFFIR
301: CYRQLDATTW ILVDISYDIF NGIQCGVPCY SWKFPSGCVI EDMGNGQSKV TWVEHVQVYE KYQVNHIFRD LLCDREAYGA KRWIVTLQRM CERFNFQMGS
401: TYPTRHDFKG EGLKNTIKVS QRMVKKFFEI LSMTDNHGDF SISPQLNRGD RISIRKNEEI IQPKGFIAIA TTSL
101: PQISTLGSSS NSSDGSLLNQ DICGSPIRYP PLRQEKNHKN SIVHAHSMIS PSPQEHDECH HDSRKQTIMF ETVVASMNEM VELWKMKDPF WVDSSSDRRC
201: FIHREIYGRK FSNQVLPPQT STGRIESSKD CGIVSMTAID LIHNFLDPVK YMNLFPTIVT KAKTIEVLDS GTWGGSTQLM YEKLHILSPL VEAREFFFIR
301: CYRQLDATTW ILVDISYDIF NGIQCGVPCY SWKFPSGCVI EDMGNGQSKV TWVEHVQVYE KYQVNHIFRD LLCDREAYGA KRWIVTLQRM CERFNFQMGS
401: TYPTRHDFKG EGLKNTIKVS QRMVKKFFEI LSMTDNHGDF SISPQLNRGD RISIRKNEEI IQPKGFIAIA TTSL
001: MEFLGDSQNH DSSETEKKNK KKKRFHRHTP HQIQRLESTF NECQHPDEKQ RNQLSRELGL APRQIKFWFQ NRRTQKKAQH ERADNCALKE ENDKIRCENI
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
Arabidopsis Description
HDG12Uncharacterized protein At1g17920 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.