Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G167900.1 | Wheat | nucleus | 97.27 | 98.21 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 95.63 | 95.89 |
| Os06t0208100-00 | Rice | nucleus | 15.71 | 89.15 |
| HORVU7Hr1G035230.2 | Barley | nucleus | 77.32 | 76.08 |
| Zm00001d044973_P001 | Maize | nucleus | 65.85 | 69.96 |
| Zm00001d037140_P004 | Maize | nucleus | 65.3 | 69.58 |
| EER89393 | Sorghum | nucleus | 66.39 | 69.43 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 63.52 | 67.88 |
| Os06t0207966-00 | Rice | plastid | 22.54 | 62.74 |
| GSMUA_Achr10P... | Banana | nucleus | 52.73 | 54.29 |
| KRH09477 | Soybean | nucleus | 53.01 | 54.04 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 52.32 | 53.94 |
| KRH38939 | Soybean | nucleus | 53.01 | 53.74 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 43.58 | 52.9 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 52.46 | 51.96 |
| Solyc03g098200.2.1 | Tomato | nucleus | 50.96 | 51.73 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 51.37 | 51.09 |
| KRH60596 | Soybean | nucleus | 49.73 | 51.05 |
| KRH41898 | Soybean | nucleus | 50.14 | 50.9 |
| PGSC0003DMT400069312 | Potato | nucleus | 49.18 | 50.35 |
| CDX96744 | Canola | nucleus | 45.9 | 49.93 |
| Solyc06g072310.2.1 | Tomato | nucleus | 48.77 | 49.79 |
| Bra016578.1-P | Field mustard | nucleus | 46.04 | 49.27 |
| TraesCS7D01G168900.1 | Wheat | nucleus | 9.97 | 48.99 |
| GSMUA_Achr10P... | Banana | nucleus | 45.49 | 48.83 |
| CDX83884 | Canola | nucleus | 45.49 | 48.61 |
| AT1G17920.1 | Thale cress | nucleus | 45.49 | 48.47 |
| TraesCS7D01G169000.1 | Wheat | nucleus | 9.84 | 48.32 |
| CDY42097 | Canola | nucleus | 33.88 | 47.97 |
| CDY26204 | Canola | nucleus | 41.67 | 47.88 |
| CDY19185 | Canola | nucleus | 44.4 | 47.65 |
| CDX68229 | Canola | nucleus | 45.49 | 47.37 |
| CDY26205 | Canola | nucleus | 44.4 | 47.1 |
| Bra003846.1-P | Field mustard | nucleus | 45.36 | 47.09 |
| Bra025938.1-P | Field mustard | nucleus | 44.13 | 46.54 |
| AT1G73360.1 | Thale cress | nucleus | 45.9 | 46.54 |
| CDY11109 | Canola | nucleus | 44.95 | 46.34 |
| CDX96471 | Canola | nucleus | 45.36 | 46.24 |
| Bra015996.1-P | Field mustard | nucleus | 45.08 | 46.03 |
| CDX72984 | Canola | nucleus | 44.81 | 45.87 |
| VIT_04s0079g00480.t01 | Wine grape | nucleus | 43.85 | 44.96 |
| TraesCS7D01G305200.1 | Wheat | nucleus | 43.17 | 39.7 |
| Solyc09g057530.1.1 | Tomato | cytosol | 7.38 | 39.42 |
| KRH11810 | Soybean | nucleus | 37.98 | 38.99 |
| TraesCS2D01G473700.1 | Wheat | nucleus | 41.26 | 38.92 |
| KRH36827 | Soybean | nucleus | 37.57 | 38.79 |
| TraesCS6D01G237000.1 | Wheat | nucleus | 41.53 | 37.81 |
| Solyc07g026570.1.1 | Tomato | nucleus | 7.24 | 37.59 |
| CDY42301 | Canola | nucleus | 34.97 | 37.1 |
| AT3G03260.1 | Thale cress | nucleus | 35.38 | 37.05 |
| Bra020066.1-P | Field mustard | nucleus | 34.43 | 36.95 |
| Bra032003.1-P | Field mustard | nucleus | 34.7 | 36.87 |
| CDY43137 | Canola | nucleus | 34.43 | 36.57 |
| CDY67945 | Canola | nucleus | 34.29 | 36.43 |
| CDY44946 | Canola | nucleus | 31.42 | 35.49 |
| CDX85461 | Canola | cytosol | 33.74 | 35.04 |
| Solyc09g066070.2.1 | Tomato | cytosol | 20.63 | 35.03 |
| Bra023611.1-P | Field mustard | nucleus | 33.61 | 34.89 |
| AT1G34650.1 | Thale cress | nucleus | 33.61 | 34.75 |
| TraesCS5D01G320600.1 | Wheat | nucleus | 40.16 | 34.63 |
| CDY49937 | Canola | nucleus | 32.65 | 34.44 |
| CDY53691 | Canola | nucleus | 33.2 | 34.23 |
| CDY21211 | Canola | nucleus | 32.38 | 34.15 |
| Bra021363.1-P | Field mustard | nucleus | 33.88 | 34.11 |
| Bra003213.1-P | Field mustard | nucleus | 33.06 | 34.08 |
| AT5G17320.1 | Thale cress | nucleus | 33.33 | 33.98 |
| PGSC0003DMT400034503 | Potato | cytosol, nucleus | 31.56 | 33.92 |
| Solyc11g011940.1.1 | Tomato | nucleus | 33.2 | 33.89 |
| CDY62389 | Canola | cytosol | 22.54 | 33.74 |
| TraesCS2D01G398600.1 | Wheat | nucleus | 36.07 | 33.67 |
| Solyc09g066030.1.1 | Tomato | nucleus | 32.92 | 33.33 |
| Solyc10g018030.1.1 | Tomato | cytosol | 18.72 | 33.17 |
| Solyc09g060140.2.1 | Tomato | mitochondrion | 16.67 | 33.15 |
| KRH36826 | Soybean | nucleus | 32.24 | 33.1 |
| PGSC0003DMT400085057 | Potato | cytosol | 21.58 | 33.05 |
| Solyc10g018020.1.1 | Tomato | extracellular | 15.16 | 33.04 |
| CDY02713 | Canola | nucleus | 33.2 | 32.88 |
| Bra008562.1-P | Field mustard | cytosol, nucleus, plastid | 32.38 | 32.78 |
| TraesCS1D01G197300.1 | Wheat | nucleus | 39.34 | 32.62 |
| PGSC0003DMT400051268 | Potato | cytosol | 22.13 | 32.46 |
| Solyc09g057540.2.1 | Tomato | cytosol | 21.99 | 32.39 |
| Solyc08g062510.2.1 | Tomato | nucleus | 28.42 | 31.85 |
| Solyc09g060170.1.1 | Tomato | cytosol | 14.89 | 31.69 |
| CDY16938 | Canola | nucleus | 28.55 | 31.67 |
| Solyc09g066050.2.1 | Tomato | cytosol | 23.91 | 31.65 |
| PGSC0003DMT400051266 | Potato | cytosol | 16.8 | 31.62 |
| CDY69499 | Canola | cytosol | 13.11 | 31.58 |
| Solyc04g025490.1.1 | Tomato | cytosol | 10.38 | 31.41 |
| KRH42428 | Soybean | nucleus | 32.38 | 31.31 |
| Solyc10g018000.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 29.51 | 30.9 |
| Solyc07g026560.1.1 | Tomato | cytosol | 19.95 | 30.87 |
| Solyc09g060130.1.1 | Tomato | cytosol | 18.58 | 30.63 |
| Solyc05g015030.1.1 | Tomato | cytosol | 19.81 | 30.59 |
| PGSC0003DMT400038820 | Potato | extracellular | 15.03 | 30.22 |
| Solyc07g037910.1.1 | Tomato | cytosol | 8.61 | 29.86 |
| TraesCS3D01G121300.1 | Wheat | nucleus | 8.47 | 29.81 |
| PGSC0003DMT400036411 | Potato | nucleus | 21.31 | 29.71 |
| TraesCS4D01G228800.1 | Wheat | nucleus | 8.61 | 29.44 |
| Solyc11g022420.1.1 | Tomato | cytosol | 18.99 | 29.02 |
| Solyc08g062520.2.1 | Tomato | cytosol | 20.08 | 28.77 |
| Solyc04g025480.1.1 | Tomato | cytosol | 25.55 | 28.55 |
| TraesCS1D01G037100.1 | Wheat | nucleus | 8.2 | 28.17 |
| TraesCS3D01G296500.3 | Wheat | nucleus | 29.92 | 27.58 |
| KRH42429 | Soybean | cytosol | 27.46 | 27.53 |
| TraesCS4D01G082600.1 | Wheat | nucleus | 29.64 | 26.96 |
| TraesCS3D01G121500.1 | Wheat | nucleus | 8.06 | 26.46 |
| TraesCS3D01G319200.1 | Wheat | nucleus | 24.04 | 25.77 |
| TraesCS5D01G335900.1 | Wheat | nucleus | 26.09 | 25.37 |
| Bra007562.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 9.56 | 24.48 |
| TraesCS7D01G217200.1 | Wheat | nucleus | 7.38 | 24.22 |
| TraesCS3D01G121400.1 | Wheat | golgi, nucleus | 8.61 | 16.24 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:IPR002913 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF490 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 |
| InterPro:START_lipid-bd_dom | EnsemblPlantsGene:TraesCS7D01G168700 | EnsemblPlants:TraesCS7D01G168700.1 | TIGR:cd00086 | TIGR:cd08875 | SEG:seg |
Description
No Description!
Coordinates
chr7D:-:119565615..119569016
Molecular Weight (calculated)
79800.5 Da
IEP (calculated)
6.667
GRAVY (calculated)
-0.318
Length
732 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFGDDQEGG SESNQHQHHQ QQNQNQRRKR YHRHTPRQIQ TLEAMFKECP HPDEAQRANL SRELGLEARQ IKFWFQNRRT QMKAQHERQD NCFLRQENDK
101: IRCENIAMRE ALKNVICPTC GGPPIAEDYF DEQKLRMENA RLKQELDSVA GLTAKYLGRP FTQLPQGTPQ MNVSSLDLSM GGVPMGGVPM GGGHHQQFGG
201: GLSLDLDLLS GAGLGMPLSD MPTMHLPAPV TEKERPLLAK MATRAMDELI RLTQQGDNVW VKIPGGDGRE TIDVQAYDSI YSKPGSSNFR AGDIRVEGSR
301: DSAIVCMSPV NLVEVFMDPS KFMEFFPSIV SHARITDPLV NGLNGRNESL VMMYEQLQFM TPAVPTREFS FLRYCRQIDQ GMWAIADVSA DMQREAHYGA
401: PPPRSRRLPS GCLIADMTNG YSKVTWVEHM EIEDKSPIGP LYRDIVQSGA AFGAHRWVAA LHRACERYAS SLEVPGVMHG ETTGVTAEGR RSMMALSQRM
501: VSSFCGGMTA SPQHQWTTMP GAAGNEVCVR VSMNQGAQPG HPNGVVLGAA TSVWLPVPAD HVFGFLRDEN TRTQWDVLCK ENSVQPVSRI PNGPNPGNCI
601: TLLRALSPSQ APQGGQATML VLQESCTDTS GCSMVVHSPI DIPAANMMMS GADPSGIPLL PSGFAIWPAG VGGGASTSAA ATPMAAGCIV SVAFQILISS
701: LPSSKLNAES IATVNNLVST TVQNIKAALN CV
101: IRCENIAMRE ALKNVICPTC GGPPIAEDYF DEQKLRMENA RLKQELDSVA GLTAKYLGRP FTQLPQGTPQ MNVSSLDLSM GGVPMGGVPM GGGHHQQFGG
201: GLSLDLDLLS GAGLGMPLSD MPTMHLPAPV TEKERPLLAK MATRAMDELI RLTQQGDNVW VKIPGGDGRE TIDVQAYDSI YSKPGSSNFR AGDIRVEGSR
301: DSAIVCMSPV NLVEVFMDPS KFMEFFPSIV SHARITDPLV NGLNGRNESL VMMYEQLQFM TPAVPTREFS FLRYCRQIDQ GMWAIADVSA DMQREAHYGA
401: PPPRSRRLPS GCLIADMTNG YSKVTWVEHM EIEDKSPIGP LYRDIVQSGA AFGAHRWVAA LHRACERYAS SLEVPGVMHG ETTGVTAEGR RSMMALSQRM
501: VSSFCGGMTA SPQHQWTTMP GAAGNEVCVR VSMNQGAQPG HPNGVVLGAA TSVWLPVPAD HVFGFLRDEN TRTQWDVLCK ENSVQPVSRI PNGPNPGNCI
601: TLLRALSPSQ APQGGQATML VLQESCTDTS GCSMVVHSPI DIPAANMMMS GADPSGIPLL PSGFAIWPAG VGGGASTSAA ATPMAAGCIV SVAFQILISS
701: LPSSKLNAES IATVNNLVST TVQNIKAALN CV
001: MEFLGDSQNH DSSETEKKNK KKKRFHRHTP HQIQRLESTF NECQHPDEKQ RNQLSRELGL APRQIKFWFQ NRRTQKKAQH ERADNCALKE ENDKIRCENI
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA
Arabidopsis Description
HDG12Uncharacterized protein At1g17920 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.