Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G325800.1 | Wheat | nucleus | 94.73 | 94.73 |
| TraesCS3B01G354900.1 | Wheat | nucleus | 93.7 | 93.7 |
| HORVU3Hr1G077690.1 | Barley | nucleus | 81.41 | 82.86 |
| Os01t0788800-01 | Rice | nucleus | 45.24 | 49.13 |
| Zm00001d043231_P001 | Maize | nucleus | 50.66 | 43.69 |
| EES01587 | Sorghum | nucleus | 48.32 | 43.42 |
| GSMUA_Achr7P00210_001 | Banana | nucleus | 29.14 | 29.31 |
| TraesCS2D01G473700.1 | Wheat | nucleus | 32.06 | 28.22 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 28.26 | 28.18 |
| TraesCS7D01G305200.1 | Wheat | nucleus | 32.21 | 27.64 |
| TraesCS6D01G237000.1 | Wheat | nucleus | 30.31 | 25.75 |
| TraesCS7D01G169000.1 | Wheat | nucleus | 5.56 | 25.5 |
| TraesCS7D01G168900.1 | Wheat | nucleus | 5.56 | 25.5 |
| TraesCS2D01G398600.1 | Wheat | nucleus | 29.14 | 25.38 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 25.77 | 24.04 |
| TraesCS5D01G320600.1 | Wheat | nucleus | 29.87 | 24.03 |
| TraesCS4D01G228800.1 | Wheat | nucleus | 7.03 | 22.43 |
| TraesCS3D01G121300.1 | Wheat | nucleus | 6.73 | 22.12 |
| TraesCS5D01G335900.1 | Wheat | nucleus | 23.87 | 21.65 |
| TraesCS1D01G037100.1 | Wheat | nucleus | 6.73 | 21.6 |
| TraesCS3D01G296500.3 | Wheat | nucleus | 24.6 | 21.16 |
| TraesCS1D01G197300.1 | Wheat | nucleus | 26.21 | 20.27 |
| TraesCS4D01G082600.1 | Wheat | nucleus | 23.57 | 20.0 |
| TraesCS3D01G121500.1 | Wheat | nucleus | 6.15 | 18.83 |
| TraesCS7D01G217200.1 | Wheat | nucleus | 6.15 | 18.83 |
| TraesCS3D01G121400.1 | Wheat | golgi, nucleus | 6.73 | 11.86 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:IPR002913 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 |
| PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF343 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 |
| SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom | EnsemblPlantsGene:TraesCS3D01G319200 | EnsemblPlants:TraesCS3D01G319200.1 | TIGR:cd00086 | TIGR:cd08875 |
| TIGR:cd14686 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:433133441..433137721
Molecular Weight (calculated)
74702.3 Da
IEP (calculated)
7.702
GRAVY (calculated)
-0.284
Length
683 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGNHGGRRR KAPQQGRPAR DDAVDISQSN SDGQDGAEGS QPKRRLQRLT PQQTQVLEGF FGICAHPDEN QRMGMSESTG LTMQQVKFWF QNKRTHMKHV
101: TGKEETYRMK AQNEMLREEN KRLASAANTS FCPSCVALPG LNPSGEVQTL RQENEQLKQQ LSQLRAEAHP SSSRPFQLDP STENITGREN DMDAIAELAQ
201: SAMHEFVVLS EAGGPLWMPV PGGSFDVLNN MAYAQTFGAR SSANVILGFM TEATRADDMV MMDAKRIVDY IMDSECYTSF CPGLVTSANT TKVYKWPTSA
301: GYNGAMHLVT VETVFASPLV PSRKCTFVRC CRDMQNGTVI IVDVSLDNGD GTVKCHKMPS GVLVRSLNSD ASQVTVIEHV QVNDTGLHEL YRPTLSGLMF
401: GARRWVSSIV RQSARLRDLF IVSKSASNGN TNGRKTLMKI ADGLLADYAS GIAAVPGSGW TILRGAGTED DIRITYRKNN DDSNNAVVSV CASFHLPVPL
501: KVTFDLLRNN LLRPKWDVLV NGNSVREEVA VCKGVAAGID DVVSILHLKD PPTGENRDNI MILQNSGYDV SGAFMVYCPV NIQLMNEIMI PSDTAQSNKV
601: SLYPTGFHLL PVEDTALGLG EGGATLVTVG FQIMLKLARG TGLYPRSAST AVGLMAENIA TIKKTLTNSH PIFYRRQPPN NLI
101: TGKEETYRMK AQNEMLREEN KRLASAANTS FCPSCVALPG LNPSGEVQTL RQENEQLKQQ LSQLRAEAHP SSSRPFQLDP STENITGREN DMDAIAELAQ
201: SAMHEFVVLS EAGGPLWMPV PGGSFDVLNN MAYAQTFGAR SSANVILGFM TEATRADDMV MMDAKRIVDY IMDSECYTSF CPGLVTSANT TKVYKWPTSA
301: GYNGAMHLVT VETVFASPLV PSRKCTFVRC CRDMQNGTVI IVDVSLDNGD GTVKCHKMPS GVLVRSLNSD ASQVTVIEHV QVNDTGLHEL YRPTLSGLMF
401: GARRWVSSIV RQSARLRDLF IVSKSASNGN TNGRKTLMKI ADGLLADYAS GIAAVPGSGW TILRGAGTED DIRITYRKNN DDSNNAVVSV CASFHLPVPL
501: KVTFDLLRNN LLRPKWDVLV NGNSVREEVA VCKGVAAGID DVVSILHLKD PPTGENRDNI MILQNSGYDV SGAFMVYCPV NIQLMNEIMI PSDTAQSNKV
601: SLYPTGFHLL PVEDTALGLG EGGATLVTVG FQIMLKLARG TGLYPRSAST AVGLMAENIA TIKKTLTNSH PIFYRRQPPN NLI
001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A
Arabidopsis Description
HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.