Factsheet for TraesCS3D01G121300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G119200.1	Wheat	nucleus	70.67	81.22
TraesCS4D01G228800.1	Wheat	nucleus	80.29	78.04
TraesCS7D01G217200.1	Wheat	nucleus	69.23	64.57
HORVU3Hr1G022070.1	Barley	nucleus	58.65	64.55
TraesCS3D01G121500.1	Wheat	nucleus	62.98	58.74
TraesCS1D01G037100.1	Wheat	nucleus	59.62	58.22
TraesCS3D01G121400.1	Wheat	golgi, nucleus	87.02	46.65
TraesCS7D01G169000.1	Wheat	nucleus	20.19	28.19
TraesCS7D01G168900.1	Wheat	nucleus	20.19	28.19
TraesCS6D01G304300.1	Wheat	nucleus	29.33	8.91
TraesCS5D01G335900.1	Wheat	nucleus	32.21	8.9
TraesCS6D01G237000.1	Wheat	nucleus	34.13	8.83
TraesCS7D01G168700.1	Wheat	nucleus	29.81	8.47
TraesCS5D01G320600.1	Wheat	nucleus	32.69	8.01
TraesCS7D01G305200.1	Wheat	nucleus	30.29	7.91
TraesCS2D01G473700.1	Wheat	nucleus	28.85	7.73
TraesCS4D01G082600.1	Wheat	nucleus	29.33	7.58
TraesCS1D01G197300.1	Wheat	nucleus	29.81	7.02
TraesCS2D01G398600.1	Wheat	nucleus	25.96	6.89
TraesCS3D01G319200.1	Wheat	nucleus	22.12	6.73
TraesCS3D01G296500.3	Wheat	nucleus	23.08	6.05
Solyc11g022410.1.1	Tomato	extracellular	0.48	1.35

Protein Annotations

EnsemblPlants:TraesCS3D01G121300.1	EnsemblPlantsGene:TraesCS3D01G121300	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	PANTHER:PTHR24326	PANTHER:PTHR24326:SF320
PFAM:PF00046	PFscan:PS50071	SMART:SM00389	SUPFAM:SSF46689	TIGR:cd00086	MapMan:15.5.3.3

Description

No Description!

Coordinates

chr3D:+:77999385..78000359

Molecular Weight (calculated)

24400.8 Da

IEP (calculated)

7.941

GRAVY (calculated)

-0.945

Length

208 amino acids

Sequence
(BLAST)

001: MRSKHNHLFQ DNHSDEMDGL LEATIVMGNT DDANVVATDH GNNDGETHSE QRMATRRAIY HRLRSEQVQQ LEAYNTYSIN VSVFRDCPYP DEKLRKDLSE
101: RLGMSAQQVK FWFQNKHTFS KGKMQRCHTQ NRWVENERLK TECQAIMLAM QNNTCLKCRG VMVQTQDTSE RQRLYTENMR LKEELLHATA YLKEGLRRNG
201: MSLPWASE

Best Arabidopsis Sequence Match ( AT3G61150.1 )
(BLAST)

001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST

Arabidopsis Description

HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.