Factsheet for TraesCS2D01G398600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G419200.1	Wheat	nucleus	92.98	92.87
TraesCS2A01G401200.3	Wheat	nucleus	93.37	91.5
HORVU2Hr1G095210.1	Barley	nucleus	85.2	85.64
Os04t0569100-01	Rice	nucleus	60.33	58.68
TraesCS6D01G237000.1	Wheat	nucleus	57.53	56.09
KXG26935	Sorghum	nucleus	55.1	53.87
GSMUA_Achr1P18760_001	Banana	nucleus	51.91	53.84
CDY18903	Canola	nucleus	46.56	51.77
VIT_15s0048g02000.t01	Wine grape	nucleus	53.32	51.54
CDX74762	Canola	nucleus	46.17	51.13
Zm00001d026088_P002	Maize	nucleus	54.21	50.96
KRH40539	Soybean	nucleus	52.68	50.37
KRH48236	Soybean	nucleus	52.68	49.82
KRH00641	Soybean	nucleus	52.17	49.76
KRH65144	Soybean	nucleus	52.81	49.52
CDX67855	Canola	nucleus	49.23	49.49
CDY45684	Canola	nucleus	49.11	49.11
Bra003439.1-P	Field mustard	nucleus	48.98	48.92
Bra004934.1-P	Field mustard	nucleus	48.98	48.85
GSMUA_Achr3P12410_001	Banana	nucleus	46.17	48.79
PGSC0003DMT400071377	Potato	nucleus	51.02	48.72
Bra037355.1-P	Field mustard	nucleus	48.98	48.61
Solyc01g091630.2.1	Tomato	nucleus	50.89	48.6
CDY51143	Canola	nucleus	48.85	48.48
CDY07201	Canola	nucleus	48.6	48.35
CDX74347	Canola	nucleus	48.34	47.79
PGSC0003DMT400019986	Potato	nucleus	49.23	47.71
AT3G61150.1	Thale cress	nucleus	49.11	47.65
CDX91894	Canola	nucleus	48.21	47.61
AT4G00730.1	Thale cress	nucleus	48.21	47.13
TraesCS5D01G320600.1	Wheat	nucleus	48.6	44.88
TraesCS6D01G304300.1	Wheat	nucleus	38.01	43.5
TraesCS7D01G305200.1	Wheat	nucleus	43.37	42.71
TraesCS2D01G473700.1	Wheat	nucleus	41.33	41.75
TraesCS7D01G169000.1	Wheat	nucleus	7.02	36.91
TraesCS7D01G168700.1	Wheat	nucleus	33.67	36.07
TraesCS7D01G168900.1	Wheat	nucleus	6.76	35.57
TraesCS1D01G197300.1	Wheat	nucleus	34.31	30.46
TraesCS3D01G296500.3	Wheat	nucleus	30.23	29.85
TraesCS3D01G319200.1	Wheat	nucleus	25.38	29.14
TraesCS5D01G335900.1	Wheat	nucleus	27.42	28.55
TraesCS4D01G082600.1	Wheat	nucleus	28.57	27.83
TraesCS4D01G228800.1	Wheat	nucleus	7.53	27.57
TraesCS1D01G037100.1	Wheat	nucleus	7.4	27.23
TraesCS3D01G121300.1	Wheat	nucleus	6.89	25.96
TraesCS3D01G121500.1	Wheat	nucleus	7.02	24.66
TraesCS7D01G217200.1	Wheat	nucleus	6.76	23.77
TraesCS3D01G121400.1	Wheat	golgi, nucleus	7.14	14.43

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913
PFAM:PF00046	PFAM:PF01852	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF487
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	EnsemblPlantsGene:TraesCS2D01G398600
EnsemblPlants:TraesCS2D01G398600.1	TIGR:cd00086	TIGR:cd08875	SEG:seg	:	:

Description

No Description!

Coordinates

chr2D:+:511688028..511693305

Molecular Weight (calculated)

84017.9 Da

IEP (calculated)

6.130

GRAVY (calculated)

-0.159

Length

784 amino acids

Sequence
(BLAST)

001: MPREKGMALW GFFDGNDAGG GPAPDMNGFP CYPAAGPGAL ASSSLSPPSS LAPAAGVVKA EDGSRPMTRH LHAVSGGDAG GGEDDEVAPE PGRHGKRKRP
101: PNARHTPRQI QELQALFEQC PHPDEKQRAA LGKRVRLQPS QVKFWFQNRR TQLKRESLMH ENQLLMAENG KLRAENLSLR VEMAHPVCGG CGGPVPAMLD
201: ESPSLEEDLR VQNATLKNEL SRLCALASAF LGRSISFVAA PPTPGSPVER IGSMPSATVA NSTVTEFTGS PSSQTVGMAI TPMAKAGIDR SVFLELATSA
301: MDELVKMAQM DEPLWIPNVP LPGSLAKETL NHEVYLRTFS PAIGVKPPGF VSEASRESGI VSSDGSVELV ETLLDERRWS RFFSCIIAES STTEEISTGA
401: AGNRDGALLL MQAKLQVLSP LVPVREVAFL RFCKQLGEGL WAVVDVSMDG LGMEQGLAVA STTANMKCRR LPSGCVVQDT PSGFCKVTWV EHTVYDESSV
501: HQLYRPLLRS GLALGAGRWL ATLQRQYDCL DVLMPKQDSS DAMLEGSRSL LRLAERMMDN FCAGVSASSA EWSKLDDVTG SIGEDVRIMA RRSVDEPGVP
601: AGVVLCAATS VWMLVTPKRL FNFLCNEKTR AEWDILSKGG PMQEVTKIYK GQQNGNAVSL LKATAPNTHQ DSSILILQET CTDASGSMVV YTPVDIPAMR
701: RVMGGEGDPA SIMLLPSGFA ILPGGPSMSG DDGHKTCGSL LTVAFQILGN RQPTGKLTVE SVQTVDSLIS CTINRIKTAL RCDA

Best Arabidopsis Sequence Match ( AT1G05230.8 )
(BLAST)

001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A

Arabidopsis Description

HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.