Factsheet for GSMUA_Achr3P12410_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P22910_001
GSMUA_Achr3P29310_001
GSMUA_Achr4P03660_001
GSMUA_Achr5P00910_001
GSMUA_Achr9P21560_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61150.1	GSMUA_Achr1P22910_001	AT1G51355.1	21798944
AT3G61150.1	GSMUA_Achr3P29310_001	AT2G30590.1	21798944
AT3G61150.1	GSMUA_Achr4P03660_001	AT2G30590.1	21798944
AT3G61150.1	GSMUA_Achr9P21560_001	AT2G30590.1	21798944
AT3G61150.1	GSMUA_Achr5P00910_001	AT3G27580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P18760_001	Banana	nucleus	72.24	70.9
GSMUA_Achr11P...	Banana	nucleus	62.94	60.18
GSMUA_Achr5P10510_001	Banana	nucleus	64.42	60.13
GSMUA_Achr11P...	Banana	nucleus	59.84	59.68
VIT_15s0048g02000.t01	Wine grape	nucleus	64.29	58.82
GSMUA_AchrUn_...	Banana	nucleus	60.78	58.65
GSMUA_Achr5P20050_001	Banana	nucleus	62.53	58.36
CDY18903	Canola	nucleus	54.58	57.45
KRH48236	Soybean	nucleus	64.15	57.42
Solyc01g091630.2.1	Tomato	nucleus	63.48	57.37
PGSC0003DMT400071377	Potato	nucleus	63.48	57.37
CDX74762	Canola	nucleus	54.45	57.06
KRH00641	Soybean	nucleus	62.94	56.81
KRH40539	Soybean	nucleus	62.67	56.71
KRH65144	Soybean	nucleus	63.48	56.34
CDY07201	Canola	nucleus	59.7	56.22
CDY51143	Canola	nucleus	59.57	55.95
Bra037355.1-P	Field mustard	nucleus	59.57	55.95
CDX67855	Canola	nucleus	58.76	55.9
Bra003439.1-P	Field mustard	nucleus	58.76	55.54
CDY45684	Canola	nucleus	58.63	55.48
Zm00001d040090_P002	Maize	nucleus	59.43	54.92
CDX74347	Canola	nucleus	58.63	54.85
Zm00001d040091_P001	Maize	nucleus	19.27	54.79
AT4G00730.1	Thale cress	nucleus	59.16	54.74
CDX91894	Canola	nucleus	58.36	54.53
PGSC0003DMT400019986	Potato	nucleus	59.16	54.26
EES02604	Sorghum	nucleus	59.57	54.23
Bra004934.1-P	Field mustard	nucleus	57.41	54.2
Os02t0674800-01	Rice	nucleus	58.63	54.1
AT3G61150.1	Thale cress	nucleus	58.76	53.96
TraesCS6A01G255800.1	Wheat	nucleus	58.22	53.73
TraesCS6D01G237000.1	Wheat	nucleus	58.09	53.61
TraesCS6B01G269700.1	Wheat	nucleus	58.09	53.61
HORVU6Hr1G065300.3	Barley	nucleus	57.55	53.38
Os04t0569100-01	Rice	nucleus	56.6	52.11
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	43.13	48.48
KXG26935	Sorghum	nucleus	52.29	48.38
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	45.28	46.28
TraesCS2D01G398600.1	Wheat	nucleus	48.79	46.17
GSMUA_Achr10P...	Banana	nucleus	44.47	46.15
TraesCS2B01G419200.1	Wheat	nucleus	48.52	45.86
TraesCS2A01G401200.3	Wheat	nucleus	48.79	45.25
Zm00001d026088_P002	Maize	nucleus	50.67	45.08
HORVU2Hr1G095210.1	Barley	nucleus	46.9	44.62
GSMUA_Achr11P...	Banana	plastid	45.82	43.09
GSMUA_Achr6P05990_001	Banana	nucleus	34.37	42.29
GSMUA_Achr7P00210_001	Banana	nucleus	38.27	41.83
GSMUA_Achr10P...	Banana	nucleus	40.03	41.77
GSMUA_Achr7P11310_001	Banana	nucleus	38.54	38.86
GSMUA_Achr2P15140_001	Banana	nucleus	38.68	38.84
GSMUA_Achr10P...	Banana	nucleus	35.44	38.56
GSMUA_Achr3P15400_001	Banana	nucleus	35.85	35.51
GSMUA_Achr5P14100_001	Banana	nucleus	35.71	35.05
GSMUA_Achr4P19010_001	Banana	nucleus	36.93	34.21
GSMUA_Achr8P27340_001	Banana	nucleus	34.23	33.91

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr3G12410_001	EnsemblPlants:GSMUA_Achr3P12410_001	EnsemblPlants:GSMUA_Achr3T12410_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	UniProt:M0SE08	PFAM:PF00046	PFAM:PF01852
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF487	SMART:SM00234
SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI000295A0AE	SEG:seg

Description

Homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Source:GMGC_GENE;Acc:GSMUA_Achr3G12410_001]

Coordinates

chr3:+:9200250..9203613

Molecular Weight (calculated)

80943.2 Da

IEP (calculated)

6.609

GRAVY (calculated)

-0.152

Length

742 amino acids

Sequence
(BLAST)

001: MSFGGLSDGR SGGALAYGNA AMTAGELSPP QLISQRLPNS AFISPRLSLG LQTNVDGQID MSRMAGVGGG SDVGSAKRSK DDENESRSES DNLEAISGDD
101: VDQENPRKKK RHHRHTPQQI QELEALFKDC PHPDEKQRLE LSRRLCLESR QVKFWFQNRR TQMKTQIERF ENTKLRQEND KMRAANMAIR EATQSAACKN
201: CGGPVMLGNV SVERLQLRLE NARLKEELDR LSVLEIGVGN NIFAGFNSVV APTISALPDY LPGDRSMLLE LALAAMEELM SMAQMEEPLW LASSQGGPKA
301: LNYEQYRRTF RPIAGISPVG SVSEASRETR IVSIDSVALV ETLMDASRWV HMFPSIVAKA TTTELISSGV SGTRDGALQL MQAELHVLSP LVAVREVSFL
401: RFCKQHAEGV WAVVDVAVDG IRADLSSANC RRLPSGCLVQ DMPDGYSKIF LLLPRDLSLD QHFCLCVVTW VEHAEYDEGQ VHHLYRPLLR SGQAFGAGRW
501: VATLQRQCEC LATLVSSTAV ARDETASITA SGQRSMLKLA RRMTNAFCAG VCASPAHGWS KLASETIGED VRVMSRMSVN VPGEPAGLVL SVATSVWIPA
601: PPKRLFDFLC ETRFRSKWDI LSNGGPMCEM AHIAKGQEAA NRVSLIWATA TNASQTSMML LQETYTDASG AMLVYAPVDI PAMHLVMNGG DSAHVALLPS
701: GFAIILVNGQ PTEKLTAETV DTVNGLISCT VQKIKAAVHS EI

Best Arabidopsis Sequence Match ( AT1G05230.4 )
(BLAST)

001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A

Arabidopsis Description

HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.