Factsheet for GSMUA_Achr11P25820_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	79.72	86.64
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	70.98	84.85
Os04t0627000-02	Rice	cytosol, peroxisome	57.29	77.13
KRH13175	Soybean	cytosol	17.24	76.84
PGSC0003DMT400061859	Potato	nucleus	66.79	76.49
VIT_10s0116g00680.t01	Wine grape	nucleus	69.33	75.34
VIT_12s0059g02310.t01	Wine grape	nucleus	72.24	75.3
EES11464	Sorghum	nucleus	74.52	74.52
Solyc03g031760.2.1	Tomato	cytosol	59.19	74.24
KRH56105	Soybean	nucleus	68.19	73.8
GSMUA_Achr10P...	Banana	nucleus	66.54	73.43
PGSC0003DMT400029291	Potato	nucleus	64.77	73.31
KRH25398	Soybean	plastid	70.22	72.8
Zm00001d002234_P003	Maize	nucleus	72.88	72.42
Solyc10g005330.2.1	Tomato	nucleus	65.15	72.19
TraesCS2D01G473700.1	Wheat	nucleus	70.98	72.16
TraesCS2B01G497500.1	Wheat	nucleus	70.85	72.13
TraesCS2A01G474000.1	Wheat	nucleus	70.98	72.07
HORVU2Hr1G106970.2	Barley	nucleus, plastid	70.72	71.81
KRH26803	Soybean	nucleus	70.98	71.7
EES13460	Sorghum	mitochondrion, nucleus	70.98	71.7
KRH22554	Soybean	nucleus	70.98	71.7
CDX90879	Canola	nucleus	64.89	71.51
CDY21319	Canola	nucleus	64.77	71.37
AT1G05230.5	Thale cress	nucleus	64.89	71.01
CDY06167	Canola	nucleus	64.77	70.97
Bra032478.1-P	Field mustard	nucleus	64.64	70.93
Bra000807.1-P	Field mustard	nucleus	53.36	70.52
Bra015401.1-P	Field mustard	nucleus	64.13	70.28
Zm00001d049443_P005	Maize	nucleus	70.85	70.23
CDX98703	Canola	nucleus	61.47	69.78
CDX76399	Canola	nucleus	63.12	69.65
CDX94054	Canola	nucleus	61.34	69.64
KRH77881	Soybean	nucleus	64.51	69.63
KRH27601	Soybean	nucleus	64.39	69.4
CDY16639	Canola	nucleus	64.39	69.3
CDX94586	Canola	nucleus	64.26	69.26
CDY27417	Canola	nucleus	62.61	69.19
AT4G04890.1	Thale cress	nucleus	65.15	69.18
Os08t0136100-01	Rice	nucleus	68.69	69.04
PGSC0003DMT400005277	Potato	nucleus	64.01	68.89
Bra029527.1-P	Field mustard	nucleus	64.77	68.59
CDY10041	Canola	nucleus	64.64	68.27
Zm00001d026351_P003	Maize	nucleus	72.88	68.13
CDY66622	Canola	nucleus	62.99	67.99
Solyc02g080260.2.1	Tomato	nucleus	64.01	67.24
AT4G21750.3	Thale cress	nucleus	64.89	67.19
Bra038757.1-P	Field mustard	nucleus	61.6	67.03
Zm00001d000247_P001	Maize	plasma membrane	60.33	66.2
Bra020872.1-P	Field mustard	nucleus	62.74	66.18
CDX79091	Canola	nucleus	62.48	66.09
TraesCS7D01G305200.1	Wheat	nucleus	66.54	65.95
TraesCS7A01G308400.1	Wheat	nucleus	66.41	65.83
HORVU7Hr1G073440.1	Barley	nucleus	66.16	65.58
TraesCS7B01G208600.1	Wheat	nucleus	66.16	65.41
CDY71572	Canola	nucleus	32.32	64.89
Bra013556.1-P	Field mustard	nucleus	55.39	63.33
EES14500	Sorghum	nucleus	65.27	63.27
CDY49515	Canola	plasma membrane	64.89	63.13
HORVU7Hr1G073450.1	Barley	mitochondrion, nucleus	63.62	63.07
Zm00001d024701_P001	Maize	nucleus	63.37	62.74
CDY46842	Canola	nucleus	64.77	61.57
KRG91238	Soybean	nucleus	53.99	58.28
CDY23096	Canola	nucleus	9.51	56.82
GSMUA_Achr7P00210_001	Banana	nucleus	47.78	55.52
KRH35579	Soybean	nucleus	53.87	54.63
GSMUA_Achr1P18760_001	Banana	nucleus	48.16	50.26
Os08t0187500-01	Rice	nucleus	20.53	49.69
GSMUA_Achr11P...	Banana	nucleus	46.64	49.46
GSMUA_Achr5P10510_001	Banana	nucleus	48.54	48.18
GSMUA_AchrUn_...	Banana	nucleus	46.89	48.11
GSMUA_Achr11P...	Banana	nucleus	47.15	47.94
GSMUA_Achr5P20050_001	Banana	nucleus	48.29	47.92
GSMUA_Achr10P...	Banana	nucleus	41.7	46.27
GSMUA_Achr3P12410_001	Banana	nucleus	43.09	45.82
GSMUA_Achr6P05990_001	Banana	nucleus	34.35	44.94
VIT_19s0177g00240.t01	Wine grape	cytosol, mitochondrion	13.31	44.3
GSMUA_Achr7P11310_001	Banana	nucleus	41.19	44.16
GSMUA_Achr2P15140_001	Banana	nucleus	41.32	44.11
GSMUA_Achr5P14100_001	Banana	nucleus	41.83	43.65
GSMUA_Achr10P...	Banana	nucleus	37.26	43.11
GSMUA_Achr4P19010_001	Banana	nucleus	41.7	41.07
PGSC0003DMT400037397	Potato	cytosol	24.59	39.51
GSMUA_Achr3P15400_001	Banana	nucleus	36.76	38.72
KRH22254	Soybean	cytosol	25.86	38.13
Solyc10g006420.2.1	Tomato	cytosol	25.35	37.95
GSMUA_Achr8P27340_001	Banana	nucleus	34.98	36.85
KRH27078	Soybean	extracellular, golgi, peroxisome	14.83	35.45

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr11G25820_001	EnsemblPlants:GSMUA_Achr11P25820_001	EnsemblPlants:GSMUA_Achr11T25820_001	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:M0RVG2
PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326
PANTHER:PTHR24326:SF349	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf
InterPro:START_lipid-bd_dom	UniParc:UPI00029592A1	SEG:seg	:	:	:

Description

Homeobox-leucine zipper protein ROC2 [Source:GMGC_GENE;Acc:GSMUA_Achr11G25820_001]

Coordinates

chr11:-:24832768..24837205

Molecular Weight (calculated)

86524.2 Da

IEP (calculated)

5.955

GRAVY (calculated)

-0.256

Length

789 amino acids

Sequence
(BLAST)

001: MPVGLMIPAR QPPSMIGRNT GTGYGSSSVL SLSQPNLLEG QQIPLQHQHH NQFVEIAQAT TAESEMARAR EDDFESKSCS ENIEGASGDD QDQNQRPRKK
101: RYHRHTQHQI QEMEAFFKEC PHPDDKQRNE LSRQLGLEPL QVKFWFQNKR TQMKNQHERQ ENSQLRADNE KLRADNLRYK EALSNASCPN CGGPAALGEM
201: SFDEHNLRIE NVRLREEIDR ISGIAAKYVG KPVASYPLLS PAIPSRSPLD LGVGGLGIEK PVVIELAVAA MEELIRMAQL SEPLWIPGLD GAAETLNEDE
301: YVRTFPRGIG PKLLGLKSEA SRETAVVIMN QMHVVEILMD VNQWANVFSG IVSRALTLEV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ESLFVRYCKQ
401: HADGTWAVVD VSLDSLRPSP VLRCRRRPSG CLIQEMPNGY SKVTWVEHVE VDDRSVHNIY RPLVNSGLAF GAKRWVSTLD RQCERLASVM ASNIPSGDIG
501: VITTPEGRKS MLKLAERMVI SFCGGVGGSA SHQWTTLSGS GAEDVRVMTR KSVDDPGRPP GIVLNAATSF WLPVPPKRVF DFLRDESSRS EWDILSNGGG
601: VQEMAHIANG RDHGNCVSLL RVNSTNSSQS NMLILQESCT DSTGSYVIYA PVDVIAMNVV LNGGDPDYVA LLPSGFAILP DGPCGGQGGE MVDGVGSGGS
701: LLTVAFQILV DSAPTAKLSL GSCPLSLKNT QDMQERVEFG ASIVGSQERT SDLPCSVVLV WRPGSNNPIY SLISHHFILC FVLFLWCWL

Best Arabidopsis Sequence Match ( AT4G04890.1 )
(BLAST)

001: MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA

Arabidopsis Description

PDF2Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V99]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.