CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56105	Soybean	nucleus	93.56	97.67
KRH22554	Soybean	nucleus	92.12	89.76
KRH26803	Soybean	nucleus	91.98	89.63
KRH13175	Soybean	cytosol	20.37	87.57
VIT_12s0059g02310.t01	Wine grape	nucleus	86.6	87.05
CDY06167	Canola	nucleus	76.08	80.42
Bra032478.1-P	Field mustard	nucleus	75.95	80.39
AT1G05230.5	Thale cress	nucleus	75.82	80.03
Bra015401.1-P	Field mustard	nucleus	75.69	80.0
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	67.81	78.18
CDY10041	Canola	nucleus	75.95	77.38
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	72.67	76.17
Os04t0627000-02	Rice	cytosol, peroxisome	58.21	75.6
KRH27601	Soybean	nucleus	70.43	73.22
KRH77881	Soybean	nucleus	70.17	73.05
CDY71572	Canola	nucleus	37.58	72.77
EES11464	Sorghum	nucleus	74.9	72.24
GSMUA_Achr10P...	Banana	nucleus	67.54	71.89
CDY49515	Canola	plasma membrane	76.48	71.76
GSMUA_Achr11P...	Banana	plastid	72.8	70.22
EES13460	Sorghum	mitochondrion, nucleus	72.01	70.17
CDY46842	Canola	nucleus	76.35	70.0
Zm00001d002234_P003	Maize	nucleus	72.67	69.65
Os08t0136100-01	Rice	nucleus	71.62	69.43
TraesCS2B01G497500.1	Wheat	nucleus	70.43	69.16
TraesCS2D01G473700.1	Wheat	nucleus	70.43	69.07
TraesCS2A01G474000.1	Wheat	nucleus	70.43	68.98
Zm00001d049443_P005	Maize	nucleus	72.01	68.84
Zm00001d026351_P003	Maize	nucleus	73.85	66.59
TraesCS7B01G208600.1	Wheat	nucleus	69.65	66.42
TraesCS7A01G308400.1	Wheat	nucleus	69.25	66.21
TraesCS7D01G305200.1	Wheat	nucleus	69.12	66.08
Zm00001d000247_P001	Maize	plasma membrane	61.63	65.23
Zm00001d024701_P001	Maize	nucleus	67.81	64.74
EES14500	Sorghum	nucleus	68.73	64.25
KRG91238	Soybean	nucleus	59.13	61.56
KRH35579	Soybean	nucleus	59.13	57.84
KRH35356	Soybean	nucleus	52.43	52.16
KRH48236	Soybean	nucleus	56.5	51.87
KRH40539	Soybean	nucleus	55.58	51.59
KRG91457	Soybean	nucleus	52.3	51.22
KRH00641	Soybean	nucleus	55.06	50.97
KRH65144	Soybean	nucleus	55.98	50.96
KRH09477	Soybean	nucleus	47.44	50.28
KRH38939	Soybean	nucleus	47.7	50.28
KRH60596	Soybean	nucleus	46.65	49.79
KRH41898	Soybean	nucleus	47.04	49.65
Os08t0187500-01	Rice	nucleus	20.63	48.16
KRH09109	Soybean	plastid	47.44	46.58
KRH38560	Soybean	nucleus	47.31	46.39
KRH44348	Soybean	nucleus	43.5	44.25
KRH47277	Soybean	nucleus	43.1	43.68
KRH09884	Soybean	plastid	42.44	43.01
KRH23432	Soybean	plastid	42.97	42.91
KRH74360	Soybean	nucleus	44.42	42.84
KRH39579	Soybean	nucleus	43.89	41.75
KRH22254	Soybean	cytosol	27.86	39.63
KRH11810	Soybean	nucleus	35.48	37.87
KRH36827	Soybean	nucleus	34.56	37.09
KRH27078	Soybean	extracellular, golgi, peroxisome	16.03	36.97
KRH36826	Soybean	nucleus	33.9	36.19
KRH42428	Soybean	nucleus	32.33	32.5
KRH42429	Soybean	cytosol	27.2	28.36

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100782260	MapMan:15.5.3.3	Gene3D:3.30.530.20	EMBL:ACUP02007248	ncoils:Coil
EnsemblPlantsGene:GLYMA_12G100100	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:K7LTZ8
EnsemblPlants:KRH25398	ProteinID:KRH25398	ProteinID:KRH25398.1	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027
PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF513	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI000296F028	SEG:seg

Description

hypothetical protein

Coordinates

chr12:-:8695039..8702855

Molecular Weight (calculated)

82891.7 Da

IEP (calculated)

5.867

GRAVY (calculated)

-0.280

Length

761 amino acids

Sequence
(BLAST)

001: MQAGIMMIPA RNMPSMIARN NNVVGFFGSS ALFTLAQPNL MDALEMGQNT SESEVPRILE DEFDSATKSG SENHEGASGE DQDPRPNKKK RYHRHTQHQI
101: QEMEAFFKEC PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQMKTQHERH ENTNLRTENE KLRADNMRYR EALSNASCPN CGGPTAIGEM SFDEHHLRLE
201: NARLREEIDR ISAIAAKYVG KPVVNYSNIS PSLPPRPLEL GVGGAGFGGQ PGIGVDMYGA GDLLRSISGP TEADKPIIIE LAVAAMEELI GMAQMGEPLW
301: LTTLDGTSTM LNEDEYIRSF PRGIGPKPSG FKCEASRETA VVIMNHVNLV EILMDVNQWS TVFSGIVSRA MTLEVLSTGV AGNYNGALQV MTAELQLPTP
401: LVPTRESYFV RYCKQHADGT WAVVDVSLDN LRPGPSARCR RRPSGCLIQE MPNGYSKVTW VEHVEVDDRG VHNLYKQLVS SGHAFGAKRW VATLDRQCER
501: LASAMATNIP TVDVGVITNQ DGRKSMMKLA ERMVISFCAG VSASTAHTWT TLSGTGADDV RVMTRKSVDD PGRPPGIVLS AATSFWLPVP PKRVFDFLRD
601: ENSRNEWDIL SNGGVVQEMA HIANGRDTGN CVSLLRVNSA NSSQSNMLIL QESCTNSTGS FVIYAPVDIV AMNVVLNGGD PDYVALLPSG FAILPDGTTS
701: HNGSGGIGET GPSGSLLTVA FQILVDSVPT AKLSLGSVAT VNNLIACTVE RIKASLSGEP A

Best Arabidopsis Sequence Match ( AT1G05230.8 )
(BLAST)

001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A

Arabidopsis Description

HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.