CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25398	Soybean	plastid	97.67	93.56
KRH13175	Soybean	cytosol	21.4	88.14
KRH22554	Soybean	nucleus	93.0	86.81
KRH26803	Soybean	nucleus	92.87	86.68
VIT_12s0059g02310.t01	Wine grape	nucleus	88.2	84.94
CDY06167	Canola	nucleus	79.7	80.69
Bra032478.1-P	Field mustard	nucleus	79.56	80.67
AT1G05230.5	Thale cress	nucleus	79.7	80.58
Bra015401.1-P	Field mustard	nucleus	79.29	80.28
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	71.06	78.48
CDY10041	Canola	nucleus	79.56	77.64
Os04t0627000-02	Rice	cytosol, peroxisome	61.04	75.94
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	73.53	73.83
KRH27601	Soybean	nucleus	74.07	73.77
KRH77881	Soybean	nucleus	73.94	73.73
CDY71572	Canola	nucleus	39.37	73.03
CDY49515	Canola	plasma membrane	79.29	71.27
EES11464	Sorghum	nucleus	76.68	70.85
GSMUA_Achr10P...	Banana	nucleus	69.14	70.49
CDY46842	Canola	nucleus	79.29	69.64
EES13460	Sorghum	mitochondrion, nucleus	73.39	68.5
GSMUA_Achr11P...	Banana	plastid	73.8	68.19
Zm00001d002234_P003	Maize	nucleus	74.21	68.14
Os08t0136100-01	Rice	nucleus	72.84	67.64
TraesCS2B01G497500.1	Wheat	nucleus	71.33	67.1
Zm00001d049443_P005	Maize	nucleus	73.25	67.09
TraesCS2D01G473700.1	Wheat	nucleus	71.33	67.01
TraesCS2A01G474000.1	Wheat	nucleus	71.33	66.92
Zm00001d026351_P003	Maize	nucleus	75.17	64.93
TraesCS7B01G208600.1	Wheat	nucleus	70.37	64.29
TraesCS7A01G308400.1	Wheat	nucleus	69.96	64.07
TraesCS7D01G305200.1	Wheat	nucleus	69.82	63.94
Zm00001d000247_P001	Maize	plasma membrane	62.83	63.7
Zm00001d024701_P001	Maize	nucleus	69.27	63.36
EES14500	Sorghum	nucleus	70.23	62.9
KRG91238	Soybean	nucleus	62.0	61.83
KRH35579	Soybean	nucleus	61.59	57.71
KRH35356	Soybean	nucleus	54.6	52.03
KRH48236	Soybean	nucleus	58.3	51.27
KRH40539	Soybean	nucleus	57.61	51.22
KRG91457	Soybean	nucleus	54.32	50.97
KRH00641	Soybean	nucleus	57.06	50.61
KRH65144	Soybean	nucleus	57.89	50.48
KRH09477	Soybean	nucleus	49.38	50.14
KRH38939	Soybean	nucleus	49.66	50.14
KRH60596	Soybean	nucleus	48.56	49.65
KRH41898	Soybean	nucleus	48.97	49.51
KRH38560	Soybean	nucleus	49.79	46.78
KRH09109	Soybean	plastid	49.52	46.58
Os08t0187500-01	Rice	nucleus	20.03	44.79
KRH44348	Soybean	nucleus	45.4	44.25
KRH47277	Soybean	nucleus	44.99	43.68
KRH09884	Soybean	plastid	43.9	42.61
KRH23432	Soybean	plastid	44.44	42.52
KRH74360	Soybean	nucleus	45.4	41.95
KRH39579	Soybean	nucleus	45.13	41.12
KRH22254	Soybean	cytosol	29.08	39.63
KRH11810	Soybean	nucleus	37.17	38.01
KRH36827	Soybean	nucleus	36.35	37.38
KRH27078	Soybean	extracellular, golgi, peroxisome	16.6	36.67
KRH36826	Soybean	nucleus	35.25	36.04
KRH42428	Soybean	nucleus	33.88	32.63
KRH42429	Soybean	cytosol	28.12	28.08

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100790101	MapMan:15.5.3.3	Gene3D:3.30.530.20	EMBL:ACUP02004100	ncoils:Coil
EnsemblPlantsGene:GLYMA_06G303700	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	UniProt:I1KFB6	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393
EnsemblPlants:KRH56105	ProteinID:KRH56105	ProteinID:KRH56105.1	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027
PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF513	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI000233A76F	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:49315595..49324059

Molecular Weight (calculated)

79512.5 Da

IEP (calculated)

5.642

GRAVY (calculated)

-0.316

Length

729 amino acids

Sequence
(BLAST)

001: MFQPNLMDAL EMGQNTPESE IPRIREDEFD SATKSGSENH EGASGEDQDP RPNKKKRYHR HTQHQIQEME AFFKECPHPD DKQRKELSRE LGLEPLQVKF
101: WFQNKRTQMK TQHERHENTN LRTENEKLRA DNMRYREALS NASCPNCGGP TAIGEMSFDE HHLRLENARL REEIDRISAI AAKYVGKPVV NYSNISPSLP
201: PRPLEIGVGG AGFGGQPGIG VDMYGAGDLL RSISGPTEAD KPIIIELAVA AMEELIGMAQ MGEPLWLTTL DGTSTMLNED EYIRSFPRGI GPKPSGFKCE
301: ASRETAVVIM NHVNLVEILM DVNQWSTVFS GIVSRAMTLE VLSTGVAGNY NGALQVMTAE LQLPTPLVPT RESYFVRYCK QHGDGTWAVV DVSLDNLRPS
401: PSARCRRRPS GCLIQEMPNG YSKVTWVEHV EVDDRGVHNL YKQLVSSGHA FGAKRLVATL DRQCERLASA MATNIPTVDV GVITNQEGRK SMMKLAERMV
501: ISFCAGVSAS TAHTWTTLSG TGADDVRVMT RKSVDDPGRP PGIVLSAATS FWLPVPPKRV FDFLRDENSR NEWDILSNGG VVQEMAHIAN GRDTGNCVSL
601: LRVNSANSSQ SNMLILQESC TDSTGSFVIY APVDIVAMNV VLNGGDPDYV ALLPSGFAIL PDGTTSHGSG GGVIGETSPS SGSLLTVAFQ ILVDSVPTAK
701: LSLGSVATVN NLIACTVERI KASLSGEPA

Best Arabidopsis Sequence Match ( AT1G05230.8 )
(BLAST)

001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A

Arabidopsis Description

HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.