Factsheet for GSMUA_Achr8P07310_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	77.41	85.15
GSMUA_Achr11P...	Banana	plastid	86.64	79.72
Os04t0627000-02	Rice	cytosol, peroxisome	62.95	77.99
KRH13175	Soybean	cytosol	18.73	76.84
Solyc03g031760.2.1	Tomato	cytosol	64.74	74.72
PGSC0003DMT400061859	Potato	nucleus	70.8	74.6
VIT_10s0116g00680.t01	Wine grape	nucleus	74.52	74.52
VIT_12s0059g02310.t01	Wine grape	nucleus	77.69	74.5
KRH56105	Soybean	nucleus	73.83	73.53
PGSC0003DMT400029291	Potato	nucleus	69.97	72.88
KRH25398	Soybean	plastid	76.17	72.67
EES11464	Sorghum	nucleus	78.93	72.62
GSMUA_Achr10P...	Banana	nucleus	71.49	72.59
KRH22554	Soybean	nucleus	77.14	71.7
KRH26803	Soybean	nucleus	77.14	71.7
TraesCS2B01G497500.1	Wheat	nucleus	76.45	71.61
HORVU2Hr1G106970.2	Barley	nucleus, plastid	76.58	71.56
TraesCS2D01G473700.1	Wheat	nucleus	76.45	71.52
TraesCS2A01G474000.1	Wheat	nucleus	76.45	71.43
CDX90879	Canola	nucleus	70.39	71.37
Solyc10g005330.2.1	Tomato	nucleus	69.97	71.35
CDY21319	Canola	nucleus	70.25	71.23
EES13460	Sorghum	mitochondrion, nucleus	76.31	70.93
Bra000807.1-P	Field mustard	nucleus	58.26	70.85
CDY27417	Canola	nucleus	69.56	70.73
Zm00001d002234_P003	Maize	nucleus	77.27	70.65
AT1G05230.5	Thale cress	nucleus	70.11	70.6
CDX98703	Canola	nucleus	67.49	70.5
CDX76399	Canola	nucleus	69.28	70.35
CDX94054	Canola	nucleus	67.22	70.22
CDY06167	Canola	nucleus	69.56	70.14
Bra032478.1-P	Field mustard	nucleus	69.42	70.1
AT4G04890.1	Thale cress	nucleus	71.49	69.85
Zm00001d049443_P005	Maize	nucleus	76.31	69.6
Bra015401.1-P	Field mustard	nucleus	68.87	69.44
CDY16639	Canola	nucleus	69.97	69.3
CDX94586	Canola	nucleus	69.83	69.26
PGSC0003DMT400005277	Potato	nucleus	69.56	68.89
Os08t0136100-01	Rice	nucleus	74.38	68.79
Bra029527.1-P	Field mustard	nucleus	70.52	68.72
AT4G21750.3	Thale cress	nucleus	71.9	68.5
KRH77881	Soybean	nucleus	68.87	68.4
KRH27601	Soybean	nucleus	68.73	68.17
CDY66622	Canola	nucleus	68.59	68.13
Bra038757.1-P	Field mustard	nucleus	67.63	67.72
Zm00001d026351_P003	Maize	nucleus	78.65	67.65
Bra020872.1-P	Field mustard	nucleus	69.28	67.25
CDY10041	Canola	nucleus	69.15	67.2
Zm00001d000247_P001	Maize	plasma membrane	66.53	67.18
Solyc02g080260.2.1	Tomato	nucleus	69.42	67.11
CDX79091	Canola	nucleus	68.73	66.89
TraesCS7A01G308400.1	Wheat	nucleus	73.28	66.83
HORVU7Hr1G073440.1	Barley	nucleus	73.28	66.83
TraesCS7D01G305200.1	Wheat	nucleus	73.14	66.71
TraesCS7B01G208600.1	Wheat	nucleus	73.0	66.42
HORVU7Hr1G073450.1	Barley	mitochondrion, nucleus	70.52	64.32
EES14500	Sorghum	nucleus	71.9	64.13
Zm00001d024701_P001	Maize	nucleus	70.39	64.12
Bra013556.1-P	Field mustard	nucleus	60.74	63.91
CDY49515	Canola	plasma membrane	69.97	62.64
CDY46842	Canola	nucleus	69.7	60.96
CDY71572	Canola	nucleus	31.68	58.52
KRG91238	Soybean	nucleus	58.26	57.87
GSMUA_Achr7P00210_001	Banana	nucleus	51.93	55.52
KRH35579	Soybean	nucleus	57.85	53.98
GSMUA_Achr11P...	Banana	nucleus	52.2	50.94
GSMUA_Achr1P18760_001	Banana	nucleus	51.24	49.21
GSMUA_Achr5P10510_001	Banana	nucleus	53.03	48.43
GSMUA_Achr11P...	Banana	nucleus	51.24	47.94
GSMUA_Achr5P20050_001	Banana	nucleus	52.48	47.92
CDY23096	Canola	nucleus	8.68	47.73
GSMUA_AchrUn_...	Banana	nucleus	50.41	47.59
Os08t0187500-01	Rice	nucleus	21.07	46.93
VIT_19s0177g00240.t01	Wine grape	cytosol, mitochondrion	15.29	46.84
GSMUA_Achr10P...	Banana	nucleus	45.59	46.55
GSMUA_Achr6P05990_001	Banana	nucleus	38.02	45.77
GSMUA_Achr3P12410_001	Banana	nucleus	46.28	45.28
GSMUA_Achr7P11310_001	Banana	nucleus	44.9	44.29
GSMUA_Achr2P15140_001	Banana	nucleus	44.49	43.71
GSMUA_Achr10P...	Banana	nucleus	41.05	43.7
GSMUA_Achr5P14100_001	Banana	nucleus	44.08	42.33
PGSC0003DMT400037397	Potato	cytosol	28.1	41.55
GSMUA_Achr4P19010_001	Banana	nucleus	44.77	40.57
KRH22254	Soybean	cytosol	29.2	39.63
Solyc10g006420.2.1	Tomato	cytosol	28.65	39.47
GSMUA_Achr3P15400_001	Banana	nucleus	39.53	38.32
KRH27078	Soybean	extracellular, golgi, peroxisome	16.67	36.67
GSMUA_Achr8P27340_001	Banana	nucleus	37.19	36.05

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008289	EnsemblPlantsGene:GSMUA_Achr8G07310_001	EnsemblPlants:GSMUA_Achr8P07310_001	EnsemblPlants:GSMUA_Achr8T07310_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:M0TND4	PFAM:PF00046	PFAM:PF01852
PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF349	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI0002962B0E	SEG:seg

Description

Homeobox-leucine zipper protein ROC2 [Source:GMGC_GENE;Acc:GSMUA_Achr8G07310_001]

Coordinates

chr8:-:4828124..4831721

Molecular Weight (calculated)

78919.8 Da

IEP (calculated)

5.640

GRAVY (calculated)

-0.307

Length

726 amino acids

Sequence
(BLAST)

001: MPVGIMIPAR QAPSMIGRNT GTGYGSSSVL SLGQPNLLEG QQIPLQYQHH NQFMEIAPTT TAESEMPRAR EEDFESKSGS ENIEVASGDD QDQSHRPRKK
101: RYHRHTQHQI QELEAFFKEC PHPDDKQRKE LSRELGLEPL QNHHERNENS QLRTENDKLR AENLRYKEAL TNASCPNCGG PAALGEMSFD EHHLRIENAR
201: LREEIDRISG IAAKYVGKPV MFGVGVSGQT DIEKPVVVEL AVAAMEELIR MAQLGEPLWI PGPDNATETL NEEEYVRALP RGIGPKPFGL NSEASRETAV
301: VIMNQMNVVE MLMDVNQWSS VFSSIVSRAM TLQVLSTGVA GNYNGALQVL SAEFQVPSPL VPTRESLFVR YCKQHPDGTW AVVDVSLDSL RPSPVLRCRR
401: RPSGCLIQEL PNGYSKVTWV EHVEVDDRSV HNLYKPLVNS GLAFGAKRWV GTLNRQCERL ASVMASNIPS GDIGVITTPE GRKSMLKLAE RMVISFCGGV
501: SASTTHQWTT LSGSGAEDVR VMTRKSVDDP GRPPGIVLNA ATSFWLPVPP KRVFDFLRDE SSRSEWDILS NGGVVQEMAH IANGQDHGNC VSLLRVNSTN
601: SNQSNMLILQ ESCTDATGSY VIYAPVDVIA MNVVLNGGDP DYVALLPSGF SILPDGPTGG GPGGGRINGG EEGGGSGGSL LTVAFQILVD SVPTAKLSLG
701: SVATVNSLIA CTVERIKASV AGEVAR

Best Arabidopsis Sequence Match ( AT4G04890.1 )
(BLAST)

001: MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA

Arabidopsis Description

PDF2Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V99]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.