Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os06t0208100-00 | Rice | nucleus | 15.33 | 84.5 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 83.54 | 80.71 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 80.31 | 77.27 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 65.26 | 76.95 |
| Zm00001d018225_P001 | Maize | nucleus | 64.98 | 66.76 |
| Zm00001d052133_P001 | Maize | nucleus | 65.54 | 66.76 |
| KRH38939 | Soybean | nucleus | 67.23 | 66.2 |
| GSMUA_Achr10P... | Banana | nucleus | 63.29 | 65.98 |
| KRH09477 | Soybean | nucleus | 66.53 | 65.88 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 65.68 | 65.77 |
| EES05874 | Sorghum | nucleus | 65.4 | 65.77 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 62.73 | 65.11 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 62.73 | 65.11 |
| Os06t0207966-00 | Rice | plastid | 23.77 | 64.26 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 62.73 | 63.99 |
| KRH60596 | Soybean | nucleus | 63.01 | 62.83 |
| KRH41898 | Soybean | nucleus | 63.71 | 62.83 |
| Zm00001d044973_P001 | Maize | nucleus | 60.34 | 62.26 |
| Zm00001d037140_P004 | Maize | nucleus | 60.06 | 62.15 |
| Solyc03g098200.2.1 | Tomato | nucleus | 62.59 | 61.72 |
| EER89393 | Sorghum | nucleus | 60.48 | 61.43 |
| HORVU6Hr1G079410.6 | Barley | nucleus | 62.45 | 61.24 |
| PGSC0003DMT400069312 | Potato | nucleus | 59.92 | 59.58 |
| Solyc06g072310.2.1 | Tomato | nucleus | 59.63 | 59.14 |
| CDX96744 | Canola | nucleus | 54.99 | 58.1 |
| AT1G17920.1 | Thale cress | nucleus | 55.98 | 57.93 |
| Bra016578.1-P | Field mustard | nucleus | 54.99 | 57.16 |
| AT1G73360.1 | Thale cress | nucleus | 57.81 | 56.93 |
| CDX83884 | Canola | nucleus | 54.57 | 56.64 |
| CDX96471 | Canola | nucleus | 56.54 | 55.99 |
| CDX68229 | Canola | nucleus | 55.27 | 55.9 |
| Bra015996.1-P | Field mustard | nucleus | 56.26 | 55.79 |
| Bra003846.1-P | Field mustard | nucleus | 55.27 | 55.74 |
| CDX72984 | Canola | nucleus | 55.98 | 55.66 |
| CDY19185 | Canola | nucleus | 52.88 | 55.13 |
| CDY26204 | Canola | nucleus | 49.23 | 54.95 |
| CDY11109 | Canola | nucleus | 54.71 | 54.79 |
| Bra025938.1-P | Field mustard | nucleus | 53.31 | 54.61 |
| CDY42097 | Canola | nucleus | 39.66 | 54.55 |
| CDY26205 | Canola | nucleus | 52.46 | 54.06 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 54.71 | 53.29 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 54.29 | 53.24 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 54.29 | 52.73 |
| GSMUA_Achr3P23090_001 | Banana | endoplasmic reticulum, plasma membrane | 45.85 | 49.39 |
| VIT_04s0079g00480.t01 | Wine grape | nucleus | 49.23 | 49.02 |
| GSMUA_Achr8P07310_001 | Banana | mitochondrion, nucleus | 46.55 | 45.59 |
| HORVU7Hr1G035230.2 | Barley | nucleus | 47.54 | 45.43 |
| GSMUA_Achr1P18760_001 | Banana | nucleus | 47.82 | 44.97 |
| GSMUA_Achr10P... | Banana | nucleus | 44.87 | 44.62 |
| GSMUA_Achr5P14100_001 | Banana | nucleus | 46.13 | 43.39 |
| KRH11810 | Soybean | nucleus | 43.46 | 43.34 |
| KRH36827 | Soybean | nucleus | 43.18 | 43.3 |
| GSMUA_Achr11P... | Banana | nucleus | 45.15 | 43.15 |
| Solyc09g057530.1.1 | Tomato | cytosol | 8.3 | 43.07 |
| GSMUA_Achr11P... | Banana | nucleus | 46.13 | 42.27 |
| GSMUA_Achr5P10510_001 | Banana | nucleus | 47.26 | 42.26 |
| GSMUA_Achr11P... | Banana | plastid | 46.27 | 41.7 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.87 | 41.48 |
| GSMUA_Achr7P00210_001 | Banana | nucleus | 39.52 | 41.38 |
| GSMUA_Achr5P20050_001 | Banana | nucleus | 46.27 | 41.38 |
| GSMUA_Achr4P19010_001 | Banana | nucleus | 45.85 | 40.7 |
| GSMUA_Achr3P12410_001 | Banana | nucleus | 41.77 | 40.03 |
| AT3G03260.1 | Thale cress | nucleus | 39.24 | 39.91 |
| Solyc09g060140.2.1 | Tomato | mitochondrion | 20.39 | 39.4 |
| PGSC0003DMT400051268 | Potato | cytosol | 27.43 | 39.08 |
| CDX85461 | Canola | cytosol | 38.68 | 39.01 |
| AT5G17320.1 | Thale cress | nucleus | 39.38 | 39.0 |
| Bra023611.1-P | Field mustard | nucleus | 38.54 | 38.87 |
| KRH36826 | Soybean | nucleus | 38.68 | 38.57 |
| Solyc09g066070.2.1 | Tomato | cytosol | 23.35 | 38.52 |
| CDY62389 | Canola | cytosol | 26.44 | 38.45 |
| Solyc09g057540.2.1 | Tomato | cytosol | 26.72 | 38.23 |
| Bra032003.1-P | Field mustard | nucleus | 36.99 | 38.17 |
| CDY43137 | Canola | nucleus | 36.85 | 38.03 |
| CDY67945 | Canola | nucleus | 36.85 | 38.03 |
| Bra020066.1-P | Field mustard | nucleus | 36.43 | 37.98 |
| CDY42301 | Canola | nucleus | 36.85 | 37.97 |
| CDY53691 | Canola | nucleus | 37.83 | 37.89 |
| PGSC0003DMT400085057 | Potato | cytosol | 25.46 | 37.87 |
| CDY49937 | Canola | nucleus | 36.85 | 37.75 |
| Bra003213.1-P | Field mustard | nucleus | 37.69 | 37.75 |
| PGSC0003DMT400034503 | Potato | cytosol, nucleus | 36.15 | 37.74 |
| CDY21211 | Canola | nucleus | 36.43 | 37.32 |
| AT1G34650.1 | Thale cress | nucleus | 37.13 | 37.29 |
| PGSC0003DMT400051266 | Potato | cytosol | 20.39 | 37.28 |
| Solyc09g066050.2.1 | Tomato | cytosol | 28.97 | 37.25 |
| Solyc09g060170.1.1 | Tomato | cytosol | 18.0 | 37.21 |
| CDY44946 | Canola | nucleus | 33.9 | 37.19 |
| Bra021363.1-P | Field mustard | nucleus | 37.97 | 37.14 |
| Bra008562.1-P | Field mustard | cytosol, nucleus, plastid | 37.55 | 36.93 |
| CDY02713 | Canola | nucleus | 38.12 | 36.67 |
| GSMUA_Achr3P15400_001 | Banana | nucleus | 38.54 | 36.58 |
| Solyc10g018030.1.1 | Tomato | cytosol | 21.24 | 36.56 |
| Solyc11g011940.1.1 | Tomato | nucleus | 36.71 | 36.4 |
| Solyc08g062510.2.1 | Tomato | nucleus | 33.33 | 36.29 |
| CDY16938 | Canola | nucleus | 33.61 | 36.21 |
| Solyc09g066030.1.1 | Tomato | nucleus | 36.71 | 36.1 |
| Solyc09g060130.1.1 | Tomato | cytosol | 22.5 | 36.04 |
| PGSC0003DMT400038820 | Potato | extracellular | 18.28 | 35.71 |
| Solyc07g026570.1.1 | Tomato | nucleus | 7.03 | 35.46 |
| CDY69499 | Canola | cytosol | 15.05 | 35.2 |
| Solyc04g025490.1.1 | Tomato | cytosol | 11.96 | 35.12 |
| Solyc05g015030.1.1 | Tomato | cytosol | 23.35 | 35.02 |
| Solyc10g018020.1.1 | Tomato | extracellular | 16.46 | 34.82 |
| KRH42428 | Soybean | nucleus | 36.57 | 34.35 |
| GSMUA_Achr8P27340_001 | Banana | nucleus | 35.87 | 34.05 |
| Solyc07g026560.1.1 | Tomato | cytosol | 22.64 | 34.04 |
| Solyc11g022420.1.1 | Tomato | cytosol | 22.93 | 34.03 |
| Solyc10g018000.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 32.35 | 32.9 |
| Solyc08g062520.2.1 | Tomato | cytosol | 23.49 | 32.68 |
| PGSC0003DMT400036411 | Potato | nucleus | 23.63 | 32.0 |
| KRH42429 | Soybean | cytosol | 32.07 | 31.23 |
| Solyc04g025480.1.1 | Tomato | cytosol | 28.69 | 31.14 |
| Solyc07g037910.1.1 | Tomato | cytosol | 9.14 | 30.81 |
| TraesCSU01G150000.1 | Wheat | nucleus | 8.72 | 28.44 |
| TraesCSU01G244000.1 | Wheat | nucleus | 7.31 | 25.24 |
| Bra007562.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 10.13 | 25.17 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | Gene3D:3.30.530.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSMUA_Achr10G25900_001 | EnsemblPlants:GSMUA_Achr10P25900_001 | EnsemblPlants:GSMUA_Achr10T25900_001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 | InterPro:IPR023393 | UniProt:M0RLG4 | PFAM:PF00046 |
| PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF490 |
| SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START-like_dom_sf | InterPro:START_lipid-bd_dom |
| UniParc:UPI000295D19B | SEG:seg | : | : | : | : |
Description
Homeobox-leucine zipper protein ROC8 [Source:GMGC_GENE;Acc:GSMUA_Achr10G25900_001]
Coordinates
chr10:+:29702661..29705784
Molecular Weight (calculated)
78237.6 Da
IEP (calculated)
6.212
GRAVY (calculated)
-0.260
Length
711 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSGDEQDVP DSQGRKKRYH RHTPRQIQEL ESMFKVCPHP DEKQRKQLSR DLGLEPRQIK FWFQNRRTQM KATALLPAQQ ERADNCLLRA ENDKIRCENI
101: AMREALRNVI CPSCGGPPPD DDPYFDEQNL RMENAKLKEE PMSSLIHFDG GGSNKHTSTH SFNVILLSLI HANESLQLDR VSSLASKYLG RPITQLPPSS
201: SSAFPYPFPA SMSELDKPLM VEMATGAMEE VIRVVQTDEP LWVKSGSDGR DILQLETYDR MFQRSARQLR FSDTRVEASR DSALVVMNAV TLVDMFMDAS
301: KWGELFPTIV SKARTVEVLA AGMAGSRSGS LVLMYEELQV LSPVVPTRDF CFLRYCQQIE PSVWAVADVS VDFPGDNQLA PSSRSRRLPS GCLIEEMPNG
401: YSKVTWVEHM EIEEKNPIHA LFRDLIDGGM AFGAQRWLAT LQRMCERFAC LNVAGIPARD IGGKELAPSP DGKRSMMKLA QRMVTNFCAN VGASNGHKWT
501: TLSGVNDVGV RVTLHKNTDA GQPNGVVLSA ATSIWLPISA ERIFSFFKDE RTRTQWDVLS NGNTVQEVAH ITNGSHPGNC ISLLRGLNSG QNTMLILQEC
601: CTDASGSVVV YSPVDLPAIN IVMSGEDPSY VPILPSGFTI LPDGRSAGGY GASSSSNPMG GSAGSLVTVA FQILMSSLPS AKLNLESVMT VNNLIGTTVQ
701: QIKAALSCPD V
101: AMREALRNVI CPSCGGPPPD DDPYFDEQNL RMENAKLKEE PMSSLIHFDG GGSNKHTSTH SFNVILLSLI HANESLQLDR VSSLASKYLG RPITQLPPSS
201: SSAFPYPFPA SMSELDKPLM VEMATGAMEE VIRVVQTDEP LWVKSGSDGR DILQLETYDR MFQRSARQLR FSDTRVEASR DSALVVMNAV TLVDMFMDAS
301: KWGELFPTIV SKARTVEVLA AGMAGSRSGS LVLMYEELQV LSPVVPTRDF CFLRYCQQIE PSVWAVADVS VDFPGDNQLA PSSRSRRLPS GCLIEEMPNG
401: YSKVTWVEHM EIEEKNPIHA LFRDLIDGGM AFGAQRWLAT LQRMCERFAC LNVAGIPARD IGGKELAPSP DGKRSMMKLA QRMVTNFCAN VGASNGHKWT
501: TLSGVNDVGV RVTLHKNTDA GQPNGVVLSA ATSIWLPISA ERIFSFFKDE RTRTQWDVLS NGNTVQEVAH ITNGSHPGNC ISLLRGLNSG QNTMLILQEC
601: CTDASGSVVV YSPVDLPAIN IVMSGEDPSY VPILPSGFTI LPDGRSAGGY GASSSSNPMG GSAGSLVTVA FQILMSSLPS AKLNLESVMT VNNLIGTTVQ
701: QIKAALSCPD V
001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
Arabidopsis Description
HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.