Factsheet for Bra025938.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26205	Canola	nucleus	95.39	95.94
Bra016578.1-P	Field mustard	nucleus	85.01	86.26
AT1G17920.1	Thale cress	nucleus	83.14	83.99
Os06t0208100-00	Rice	nucleus	12.82	68.99
Bra003846.1-P	Field mustard	nucleus	69.02	67.94
Bra015996.1-P	Field mustard	nucleus	69.74	67.5
KRH09477	Soybean	nucleus	63.54	61.42
VIT_17s0053g00780.t01	Wine grape	nucleus	62.82	61.41
KRH38939	Soybean	nucleus	63.26	60.8
PGSC0003DMT400069312	Potato	nucleus	59.65	57.9
KRH60596	Soybean	nucleus	59.37	57.78
Solyc06g072310.2.1	Tomato	nucleus	59.22	57.32
Solyc03g098200.2.1	Tomato	nucleus	59.51	57.28
KRH41898	Soybean	nucleus	58.79	56.59
Os06t0207966-00	Rice	plastid	20.46	53.99
TraesCS6D01G304300.1	Wheat	nucleus	52.74	53.43
GSMUA_Achr10P...	Banana	nucleus	54.61	53.31
TraesCS6A01G324500.1	Wheat	nucleus	52.45	53.14
GSMUA_Achr6P05990_001	Banana	nucleus	46.11	53.07
Bra000960.1-P	Field mustard	extracellular	8.93	52.99
EES05874	Sorghum	nucleus	53.6	52.62
Zm00001d052133_P001	Maize	nucleus	52.74	52.44
Zm00001d018225_P001	Maize	nucleus	52.16	52.31
TraesCS6B01G354900.3	Wheat	nucleus	52.45	52.22
GSMUA_Achr2P15140_001	Banana	nucleus	54.32	51.01
GSMUA_Achr7P11310_001	Banana	nucleus	53.89	50.82
Zm00001d037140_P004	Maize	nucleus	49.71	50.22
Zm00001d044973_P001	Maize	nucleus	49.57	49.93
EER89393	Sorghum	nucleus	49.71	49.29
GSMUA_Achr10P...	Banana	nucleus	47.98	48.83
TraesCS7A01G167900.1	Wheat	nucleus	46.54	44.55
TraesCS7D01G168700.1	Wheat	nucleus	46.54	44.13
TraesCS7B01G072700.1	Wheat	nucleus	46.4	44.11
Bra000807.1-P	Field mustard	nucleus	37.75	43.89
Bra015401.1-P	Field mustard	nucleus	44.81	43.19
Bra029527.1-P	Field mustard	nucleus	46.25	43.09
Bra032478.1-P	Field mustard	nucleus	44.09	42.56
Bra020872.1-P	Field mustard	nucleus	45.1	41.84
Bra038757.1-P	Field mustard	nucleus	43.66	41.79
Bra013556.1-P	Field mustard	nucleus	39.77	40.0
Bra037355.1-P	Field mustard	nucleus	44.24	38.86
Bra028295.1-P	Field mustard	nucleus	37.75	38.42
Bra003439.1-P	Field mustard	nucleus	41.93	37.07
Bra004934.1-P	Field mustard	nucleus	41.79	36.9
Bra023611.1-P	Field mustard	nucleus	37.18	36.6
Bra005588.1-P	Field mustard	nucleus	37.03	36.51
Bra021035.1-P	Field mustard	nucleus	37.61	35.56
Bra008562.1-P	Field mustard	cytosol, nucleus, plastid	37.03	35.55
Bra003213.1-P	Field mustard	nucleus	36.31	35.49
Bra021779.1-P	Field mustard	nucleus	36.6	34.89
Bra024984.1-P	Field mustard	nucleus	39.63	34.59
Bra032003.1-P	Field mustard	nucleus	33.43	33.67
Bra003535.1-P	Field mustard	nucleus	36.02	33.33
Bra017519.1-P	Field mustard	nucleus	39.19	33.33
Bra020066.1-P	Field mustard	nucleus	32.71	33.28
Bra021363.1-P	Field mustard	nucleus	33.29	31.77
Bra013898.1-P	Field mustard	nucleus	23.63	26.32
TraesCSU01G150000.1	Wheat	nucleus	8.21	26.15
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	10.52	25.52
TraesCSU01G244000.1	Wheat	nucleus	6.63	22.33

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	Gene3D:3.30.530.20	EnsemblPlantsGene:Bra025938	EnsemblPlants:Bra025938.1	EnsemblPlants:Bra025938.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:M4EAX9	PFAM:PF00046
PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF490
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom
UniParc:UPI000253F377	SEG:seg	:	:	:	:

Description

AT1G17920 (E=8e-296) HDG12 | HDG12 (HOMEODOMAIN GLABROUS 12); transcription factor

Coordinates

chrA06:-:6873826..6876631

Molecular Weight (calculated)

77138.0 Da

IEP (calculated)

7.019

GRAVY (calculated)

-0.329

Length

694 amino acids

Sequence
(BLAST)

001: MEFLGDSSET DKKKMKKRFH RHTPHQIHRL ESSFNECQHP DEKQRLQLSK ELGLSPRQIK FWFQNRRTQK KAQHERADNC ALKEENDRIR CENIAIREAI
101: KHAICLNCGD APLHEDSYFD EQKLRIENAH LREELEKVSS IAAQFMGRPL SHLPPLLNPM HVSPLELFHS GPSLDFDLLT GSSSSSMTVT TLPSQPNLVL
201: SDMDKSLMTN ISVTAMEELL RLTQTNEALW IKTSGCRDVL NLQRYENMFP RSSGRGGKNH NVRKEATRSS GVVFTNAITL VNMLMDSVKS SELFSSVVAS
301: SKTLAVVSSG VRGSHGDALH LMLEELQVLS PLVQTREFSV LRYCQQIEHG TWAILNVSYE LPQFIPHSRS YRFPSGCLIQ DLSNGYSKVT WVEHVEVEEQ
401: EPIHEMFKDN IREGIAFGAE RWIATLQRMS ERFKALLEPA TSSRDLKGVV PTPEGKQSIM RLAQRMVSNF CLSVGTSNST RSTVVSGLDA FGIRVTSYKS
501: QHEPNGMVLC AATSFWLPVS PQNVFNFLKD ERTRPQWDVL LNGSAVQEVA HIANGSHPGN CISVLRGFNA SSSQNNMLIL QESCVDSSGS LVVYTPVDLS
601: ALNMAMTGQD TSYIPILPSG FAVLPEGGRN NQTAEIKAEG GGEGGGSLIT VGFQIMVSSL QSGKLNMESM ETVNNLISTT VHQIKTTLNS PSTA

Best Arabidopsis Sequence Match ( AT1G17920.2 )
(BLAST)

001: MEFLGDSQNH DSSETEKKNK KKKRFHRHTP HQIQRLESTF NECQHPDEKQ RNQLSRELGL APRQIKFWFQ NRRTQKKAQH ERADNCALKE ENDKIRCENI
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA

Arabidopsis Description

HDG12Uncharacterized protein At1g17920 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.