Factsheet for VIT_17s0053g00780.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g02030.t01
VIT_17s0000g03690.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73360.1	VIT_02s0012g02030.t01	AT4G17710.1	21798944
AT1G73360.1	VIT_17s0000g03690.t01	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0208100-00	Rice	nucleus	15.21	83.72
KRH38939	Soybean	nucleus	82.25	80.89
KRH09477	Soybean	nucleus	81.69	80.78
KRH60596	Soybean	nucleus	76.9	76.58
Solyc03g098200.2.1	Tomato	nucleus	77.75	76.56
KRH41898	Soybean	nucleus	76.62	75.45
Solyc06g072310.2.1	Tomato	nucleus	74.37	73.64
PGSC0003DMT400069312	Potato	nucleus	74.08	73.57
AT1G73360.1	Thale cress	nucleus	67.75	66.62
AT1G17920.1	Thale cress	nucleus	64.23	66.38
CDX96744	Canola	nucleus	62.54	65.97
CDY26204	Canola	nucleus	59.15	65.93
CDX68229	Canola	nucleus	65.07	65.72
GSMUA_Achr10P...	Banana	nucleus	65.77	65.68
Bra015996.1-P	Field mustard	nucleus	66.2	65.55
CDX96471	Canola	nucleus	66.2	65.46
Bra003846.1-P	Field mustard	nucleus	64.79	65.25
CDX72984	Canola	nucleus	65.63	65.17
Bra016578.1-P	Field mustard	nucleus	62.54	64.91
Zm00001d018225_P001	Maize	nucleus	63.1	64.74
CDY11109	Canola	nucleus	64.65	64.65
TraesCS6A01G324500.1	Wheat	nucleus	61.97	64.23
CDX83884	Canola	nucleus	61.97	64.23
TraesCS6D01G304300.1	Wheat	nucleus	61.83	64.09
EES05874	Sorghum	nucleus	63.66	63.93
CDY19185	Canola	nucleus	61.41	63.93
Zm00001d052133_P001	Maize	nucleus	62.82	63.9
CDY42097	Canola	nucleus	46.48	63.83
GSMUA_Achr2P15140_001	Banana	nucleus	65.92	63.33
CDY26205	Canola	nucleus	61.41	63.19
TraesCS6B01G354900.3	Wheat	nucleus	61.83	62.98
Bra025938.1-P	Field mustard	nucleus	61.41	62.82
GSMUA_Achr6P05990_001	Banana	nucleus	53.24	62.69
GSMUA_Achr7P11310_001	Banana	nucleus	64.51	62.23
Os06t0207966-00	Rice	plastid	22.68	61.22
Zm00001d044973_P001	Maize	nucleus	58.45	60.23
Zm00001d037140_P004	Maize	nucleus	58.17	60.12
EER89393	Sorghum	nucleus	59.01	59.86
GSMUA_Achr10P...	Banana	nucleus	56.2	58.5
VIT_04s0079g00480.t01	Wine grape	nucleus	56.06	55.74
TraesCS7B01G072700.1	Wheat	nucleus	53.94	52.47
TraesCS7A01G167900.1	Wheat	nucleus	53.52	52.41
TraesCS7D01G168700.1	Wheat	nucleus	53.94	52.32
VIT_10s0116g00680.t01	Wine grape	nucleus	50.85	49.72
VIT_12s0059g02310.t01	Wine grape	nucleus	51.69	48.48
VIT_02s0012g02030.t01	Wine grape	nucleus	52.39	46.62
VIT_15s0048g02000.t01	Wine grape	nucleus	52.39	45.87
VIT_16s0100g00670.t01	Wine grape	nucleus	46.34	42.02
VIT_09s0018g02100.t01	Wine grape	nucleus	4.37	40.26
VIT_09s0002g04340.t01	Wine grape	nucleus	40.28	38.13
VIT_19s0177g00240.t01	Wine grape	cytosol, mitochondrion	11.83	35.44
TraesCSU01G150000.1	Wheat	nucleus	9.01	29.36
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	10.99	27.27
TraesCSU01G244000.1	Wheat	nucleus	7.75	26.7
VIT_13s0067g01580.t01	Wine grape	nucleus	4.08	25.89

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100251182	wikigene:100251182	MapMan:15.5.3.3	EMBL:AM467170	ProteinID:CAN83483
ProteinID:CAN83483.1	ProteinID:CCB58813	ProteinID:CCB58813.1	ncoils:Coil	UniProt:F6HVV0	EMBL:FN596258
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	EntrezGene:LOC100251182	wikigene:LOC100251182	PFAM:PF00046
PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF236
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	TIGR:TC65912
UniParc:UPI000210A1BA	ArrayExpress:VIT_17s0053g00780	EnsemblPlantsGene:VIT_17s0053g00780	EnsemblPlants:VIT_17s0053g00780.t01	unigene:Vvi.11188	RefSeq:XP_002271012
RefSeq:XP_002271012.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr17:-:16227040..16230509

Molecular Weight (calculated)

78108.3 Da

IEP (calculated)

6.820

GRAVY (calculated)

-0.300

Length

710 amino acids

Sequence
(BLAST)

001: MEYGSGGGGG GSGGSGGDPD GSDSRRKKRY HRHTAHQIQR LEGMFKECPH PDEKQRLQLS RELALAPRQI KFWFQNRRTQ MKAQHERADN CALRVENDKI
101: RCENIAIREA LKNVICPSCG GPPIGEDSYF DEQKLRVENA QLKEELDRVS SIAAKYIGRP ISQLPPVQPV HISSLDLSMG SFGGQGMGSG PSLDLDLLPG
201: SSSAMPILPF QGTGISDMDK SLMADVAGNA LDELLRLLQT NEPLWMKSTT DGRDVLNLES YERIFPRANS HLKNPNVRIE ASRDSGVVIM NSLALVDIFM
301: DSNKWMELFP TIVSMARTLE VLSSGMMGGQ SGSLQLMYGE LQVLSSLVPT REFYFLRYCQ QIEQGSWAIV DVSYDFPRDN QFAPQNPSHR LPSGCLIQDM
401: PNGYSKVTWV EHVEIEDKTP THRLYRDLIH RGLAFGAERW LATLQRMCER FACLMVKGTS TRDLGGVIPS PDGKRSMMKL AQRMVNNFCA SISTSNGHRW
501: TTLSGLNEVG VRVTIHKNTD PGQPNGVVLS AATTIWLPVS PQNVFNFFRD ERTRPQWDVL SNGNAVQEVA HIANGPHPGN CISVLRAFNT SQNNMLILQE
601: SCIDSSGSLV IYCPVDLPAI NIAMSGEDPS YIPLLPSGFT ISPDGRLDQG DGASSSSSTT ASMGRSGGSL ITVVFQILVS SLPSAKLNLE SVTTVNNLIA
701: HSKNIVWFGY

Best Arabidopsis Sequence Match ( AT1G73360.1 )
(BLAST)

001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA

Arabidopsis Description

HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.