Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d004894_P001 | |
| Zm00001d030069_P004 | |
| Zm00001d052595_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G73360.1 | Zm00001d030069_P004 | AT4G17710.1 | 21798944 |
| AT1G73360.1 | Zm00001d004894_P001 | AT5G38420.1 | 21798944 |
| AT1G73360.1 | Zm00001d052595_P001 | AT5G38420.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d044973_P001 | Maize | nucleus | 95.63 | 95.36 |
| EER89393 | Sorghum | nucleus | 96.07 | 94.29 |
| Os06t0208100-00 | Rice | nucleus | 17.47 | 93.02 |
| Zm00001d052133_P001 | Maize | nucleus | 78.75 | 77.51 |
| Zm00001d018225_P001 | Maize | nucleus | 77.73 | 77.17 |
| Os06t0207966-00 | Rice | plastid | 29.4 | 76.81 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 69.29 | 65.66 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 69.58 | 65.3 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 69.14 | 65.07 |
| GSMUA_Achr10P... | Banana | nucleus | 62.15 | 60.06 |
| KRH09477 | Soybean | nucleus | 62.74 | 60.03 |
| KRH38939 | Soybean | nucleus | 62.88 | 59.83 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 60.12 | 58.17 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 62.15 | 57.78 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 61.86 | 57.74 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 50.66 | 57.71 |
| KRH60596 | Soybean | nucleus | 59.83 | 57.64 |
| KRH41898 | Soybean | nucleus | 59.83 | 57.0 |
| HORVU7Hr1G035230.2 | Barley | nucleus | 61.72 | 56.99 |
| Solyc03g098200.2.1 | Tomato | nucleus | 58.37 | 55.62 |
| GSMUA_Achr10P... | Banana | nucleus | 54.59 | 54.99 |
| PGSC0003DMT400069312 | Potato | nucleus | 56.19 | 53.99 |
| Solyc06g072310.2.1 | Tomato | nucleus | 56.04 | 53.7 |
| AT1G17920.1 | Thale cress | nucleus | 52.84 | 52.84 |
| CDX96744 | Canola | nucleus | 51.67 | 52.75 |
| Bra016578.1-P | Field mustard | nucleus | 51.53 | 51.75 |
| CDX83884 | Canola | nucleus | 51.53 | 51.68 |
| CDX68229 | Canola | nucleus | 52.84 | 51.64 |
| AT1G73360.1 | Thale cress | nucleus | 54.15 | 51.52 |
| Bra003846.1-P | Field mustard | nucleus | 52.69 | 51.35 |
| CDY26204 | Canola | nucleus | 47.31 | 51.02 |
| CDY19185 | Canola | nucleus | 50.51 | 50.88 |
| CDY11109 | Canola | nucleus | 52.26 | 50.56 |
| CDX96471 | Canola | nucleus | 52.84 | 50.56 |
| Bra015996.1-P | Field mustard | nucleus | 52.4 | 50.21 |
| CDX72984 | Canola | nucleus | 52.11 | 50.07 |
| CDY42097 | Canola | nucleus | 37.55 | 49.9 |
| Bra025938.1-P | Field mustard | nucleus | 50.22 | 49.71 |
| CDY26205 | Canola | nucleus | 49.93 | 49.71 |
| VIT_04s0079g00480.t01 | Wine grape | nucleus | 50.36 | 48.46 |
| Solyc09g057530.1.1 | Tomato | cytosol | 8.59 | 43.07 |
| Zm00001d049443_P005 | Maize | nucleus | 48.76 | 42.09 |
| Zm00001d002234_P003 | Maize | nucleus | 47.89 | 41.44 |
| KRH11810 | Soybean | nucleus | 42.5 | 40.95 |
| Zm00001d024701_P001 | Maize | nucleus | 47.45 | 40.9 |
| KRH36827 | Soybean | nucleus | 41.78 | 40.48 |
| Zm00001d026351_P003 | Maize | nucleus | 49.49 | 40.28 |
| Zm00001d040090_P002 | Maize | nucleus | 46.87 | 40.1 |
| AT3G03260.1 | Thale cress | nucleus | 40.47 | 39.77 |
| Zm00001d000247_P001 | Maize | plasma membrane | 40.76 | 38.94 |
| CDY42301 | Canola | nucleus | 38.57 | 38.41 |
| CDX85461 | Canola | cytosol | 39.16 | 38.16 |
| Bra023611.1-P | Field mustard | nucleus | 39.01 | 38.01 |
| Bra020066.1-P | Field mustard | nucleus | 37.7 | 37.98 |
| Bra032003.1-P | Field mustard | nucleus | 37.85 | 37.74 |
| AT5G17320.1 | Thale cress | nucleus | 39.16 | 37.47 |
| CDY43137 | Canola | nucleus | 37.55 | 37.45 |
| CDY67945 | Canola | nucleus | 37.55 | 37.45 |
| Zm00001d026088_P002 | Maize | nucleus | 44.98 | 37.05 |
| CDY53691 | Canola | nucleus | 38.14 | 36.9 |
| Bra003213.1-P | Field mustard | nucleus | 37.99 | 36.76 |
| Solyc09g066070.2.1 | Tomato | cytosol | 23.0 | 36.66 |
| AT1G34650.1 | Thale cress | nucleus | 37.7 | 36.58 |
| CDY44946 | Canola | nucleus | 34.5 | 36.57 |
| CDY62389 | Canola | cytosol | 25.91 | 36.4 |
| Solyc07g026570.1.1 | Tomato | nucleus | 7.42 | 36.17 |
| CDY02713 | Canola | nucleus | 38.72 | 35.99 |
| CDY49937 | Canola | nucleus | 36.24 | 35.88 |
| Bra008562.1-P | Field mustard | cytosol, nucleus, plastid | 37.41 | 35.55 |
| Zm00001d021236_P004 | Maize | nucleus | 46.43 | 35.33 |
| CDY21211 | Canola | nucleus | 35.66 | 35.3 |
| KRH36826 | Soybean | nucleus | 36.54 | 35.2 |
| Zm00001d030069_P004 | Maize | nucleus | 45.27 | 35.18 |
| Solyc11g011940.1.1 | Tomato | nucleus | 36.68 | 35.15 |
| PGSC0003DMT400034503 | Potato | cytosol, nucleus | 34.79 | 35.1 |
| Bra021363.1-P | Field mustard | nucleus | 37.12 | 35.08 |
| Solyc09g060140.2.1 | Tomato | mitochondrion | 18.63 | 34.78 |
| CDY16938 | Canola | nucleus | 33.33 | 34.7 |
| PGSC0003DMT400085057 | Potato | cytosol | 24.02 | 34.52 |
| Zm00001d040091_P001 | Maize | nucleus | 13.1 | 34.48 |
| Solyc09g057540.2.1 | Tomato | cytosol | 24.89 | 34.41 |
| Solyc10g018030.1.1 | Tomato | cytosol | 20.52 | 34.14 |
| Solyc08g062510.2.1 | Tomato | nucleus | 32.31 | 34.0 |
| PGSC0003DMT400051268 | Potato | cytosol | 24.6 | 33.87 |
| Solyc09g066030.1.1 | Tomato | nucleus | 35.52 | 33.75 |
| Solyc09g060170.1.1 | Tomato | cytosol | 16.89 | 33.72 |
| Solyc09g060130.1.1 | Tomato | cytosol | 21.69 | 33.56 |
| Solyc05g015030.1.1 | Tomato | cytosol | 23.0 | 33.33 |
| PGSC0003DMT400038820 | Potato | extracellular | 17.32 | 32.69 |
| PGSC0003DMT400051266 | Potato | cytosol | 18.49 | 32.65 |
| KRH42428 | Soybean | nucleus | 35.81 | 32.5 |
| Solyc10g018020.1.1 | Tomato | extracellular | 15.87 | 32.44 |
| Solyc09g066050.2.1 | Tomato | cytosol | 26.06 | 32.37 |
| CDY69499 | Canola | cytosol | 14.26 | 32.24 |
| Solyc10g018000.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 32.46 | 31.9 |
| Solyc04g025490.1.1 | Tomato | cytosol | 11.21 | 31.82 |
| Solyc11g022420.1.1 | Tomato | cytosol | 21.54 | 30.9 |
| Solyc08g062520.2.1 | Tomato | cytosol | 22.71 | 30.53 |
| Solyc07g026560.1.1 | Tomato | cytosol | 20.82 | 30.23 |
| Zm00001d019477_P001 | Maize | nucleus | 32.31 | 30.16 |
| Solyc04g025480.1.1 | Tomato | cytosol | 28.24 | 29.62 |
| PGSC0003DMT400036411 | Potato | nucleus | 22.42 | 29.33 |
| Zm00001d004234_P001 | Maize | nucleus | 30.13 | 29.28 |
| KRH42429 | Soybean | cytosol | 30.13 | 28.36 |
| Solyc07g037910.1.1 | Tomato | cytosol | 8.59 | 27.96 |
| TraesCSU01G150000.1 | Wheat | nucleus | 8.44 | 26.61 |
| Zm00001d004230_P030 | Maize | nucleus | 29.69 | 25.06 |
| Zm00001d043231_P001 | Maize | nucleus | 28.82 | 25.0 |
| Bra007562.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 10.04 | 24.13 |
| TraesCSU01G244000.1 | Wheat | nucleus | 7.13 | 23.79 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:103629886 | MapMan:15.5.3.3 | ProteinID:AQK83084.1 | ncoils:Coil | ProteinID:DAA34964.1 |
| UniProt:G2J5S9 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 | PFAM:PF00046 | PFAM:PF01852 |
| ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF236 | SMART:SM00234 |
| SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom | UniParc:UPI00022969F5 | EnsemblPlantsGene:Zm00001d037140 |
| EnsemblPlants:Zm00001d037140_P004 | EnsemblPlants:Zm00001d037140_T004 | SEG:seg | : | : | : |
Description
Homeobox-transcription factor 10Homeobox-leucine zipper protein HDG11
Coordinates
chr6:-:113744501..113748815
Molecular Weight (calculated)
74913.7 Da
IEP (calculated)
6.045
GRAVY (calculated)
-0.166
Length
687 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFGDEPEGS DSQRQRKRYH RHTPRQIQQL EAMFKECPHP DENQRAALSR ELGLEPRQIK FWFQNRRTQM KAQHERADNC FLRAENDKIR CENITMREAL
101: KNVICPSCGG PPVDEDFFDE QKLRMENARL KEELDRVSSI TSKYLGRPFT QMPPVPTMSV SSLDLSVGGM GSLGGPSLDL DLLSGCSSGL PYQVPAPVTE
201: MERPMMVDMA ARAMDELIRL AQAGEQIWVK GVPGDAREVL DVGTYDSLFA KPGAAFRPPD INVEASRDSG LVFMSAVALV DVFMDTNKWM EFFPGIVSKA
301: QTVDVLVNGL GGRSESLIMM YEELHIMTPV VPTRELSFLR YCKQIEQGLW AVADVSLEGQ RDAHYGVPSR SRRMPSGCLI ADMSNGYSKV TWVEHMEIEQ
401: MLPINVLYRN LVLSGAAFGA HRWLAALQRA CERFASVATL GVPHHDVAGV TPEGKRSMTK LSQRMVSSFC ASLSSSPLQR WTLLSGTTDV SVRVSTHRST
501: DSGQPNGVVL SAATSIWLPV PGDHVFAFVR DENARSQWDV LSHGNQVQEV SRIPNGSNPG NCISLLRGLN ANQNSMLILQ ESCTDASGAL VVYSPIDIPA
601: ANVVMSGEDP SGIPLLPSGF AILPGSGAGA SSSAVVPPPG CVVTVAFQIL VSNLPSSRLN AESVATVNSL IGTTVQQIKA ALNCAGH
101: KNVICPSCGG PPVDEDFFDE QKLRMENARL KEELDRVSSI TSKYLGRPFT QMPPVPTMSV SSLDLSVGGM GSLGGPSLDL DLLSGCSSGL PYQVPAPVTE
201: MERPMMVDMA ARAMDELIRL AQAGEQIWVK GVPGDAREVL DVGTYDSLFA KPGAAFRPPD INVEASRDSG LVFMSAVALV DVFMDTNKWM EFFPGIVSKA
301: QTVDVLVNGL GGRSESLIMM YEELHIMTPV VPTRELSFLR YCKQIEQGLW AVADVSLEGQ RDAHYGVPSR SRRMPSGCLI ADMSNGYSKV TWVEHMEIEQ
401: MLPINVLYRN LVLSGAAFGA HRWLAALQRA CERFASVATL GVPHHDVAGV TPEGKRSMTK LSQRMVSSFC ASLSSSPLQR WTLLSGTTDV SVRVSTHRST
501: DSGQPNGVVL SAATSIWLPV PGDHVFAFVR DENARSQWDV LSHGNQVQEV SRIPNGSNPG NCISLLRGLN ANQNSMLILQ ESCTDASGAL VVYSPIDIPA
601: ANVVMSGEDP SGIPLLPSGF AILPGSGAGA SSSAVVPPPG CVVTVAFQIL VSNLPSSRLN AESVATVNSL IGTTVQQIKA ALNCAGH
001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
Arabidopsis Description
HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.