Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os06t0208100-00 | Rice | nucleus | 14.21 | 81.4 |
| GSMUA_Achr10P... | Banana | nucleus | 77.27 | 80.31 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 76.45 | 76.77 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 62.38 | 76.45 |
| Zm00001d018225_P001 | Maize | nucleus | 62.11 | 66.33 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 63.33 | 65.92 |
| Zm00001d052133_P001 | Maize | nucleus | 62.25 | 65.9 |
| EES05874 | Sorghum | nucleus | 62.92 | 65.77 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 60.76 | 65.55 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 60.62 | 65.4 |
| KRH38939 | Soybean | nucleus | 63.87 | 65.37 |
| KRH09477 | Soybean | nucleus | 63.33 | 65.18 |
| GSMUA_Achr10P... | Banana | nucleus | 59.4 | 64.37 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 60.35 | 63.99 |
| KRH60596 | Soybean | nucleus | 60.22 | 62.41 |
| KRH41898 | Soybean | nucleus | 60.76 | 62.27 |
| Zm00001d037140_P004 | Maize | nucleus | 57.78 | 62.15 |
| Zm00001d044973_P001 | Maize | nucleus | 57.92 | 62.12 |
| HORVU6Hr1G079410.6 | Barley | nucleus | 60.49 | 61.66 |
| Solyc03g098200.2.1 | Tomato | nucleus | 60.08 | 61.58 |
| EER89393 | Sorghum | nucleus | 57.92 | 61.14 |
| Os06t0207966-00 | Rice | plastid | 21.65 | 60.84 |
| PGSC0003DMT400069312 | Potato | nucleus | 58.19 | 60.14 |
| Solyc06g072310.2.1 | Tomato | nucleus | 57.92 | 59.69 |
| CDX96744 | Canola | nucleus | 52.1 | 57.21 |
| AT1G17920.1 | Thale cress | nucleus | 53.04 | 57.06 |
| AT1G73360.1 | Thale cress | nucleus | 55.35 | 56.65 |
| Bra016578.1-P | Field mustard | nucleus | 51.83 | 55.99 |
| CDX83884 | Canola | nucleus | 51.69 | 55.77 |
| CDX68229 | Canola | nucleus | 53.04 | 55.76 |
| Bra003846.1-P | Field mustard | nucleus | 53.04 | 55.6 |
| Bra015996.1-P | Field mustard | nucleus | 53.59 | 55.23 |
| CDX96471 | Canola | nucleus | 53.59 | 55.15 |
| CDX72984 | Canola | nucleus | 53.32 | 55.1 |
| CDY26204 | Canola | nucleus | 47.5 | 55.1 |
| CDY11109 | Canola | nucleus | 52.64 | 54.79 |
| CDY19185 | Canola | nucleus | 50.47 | 54.69 |
| Bra025938.1-P | Field mustard | nucleus | 51.01 | 54.32 |
| CDY26205 | Canola | nucleus | 50.47 | 54.06 |
| CDY42097 | Canola | nucleus | 37.48 | 53.58 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 52.23 | 52.88 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 51.69 | 52.69 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 51.96 | 52.46 |
| VIT_04s0079g00480.t01 | Wine grape | nucleus | 47.77 | 49.44 |
| GSMUA_Achr3P23090_001 | Banana | endoplasmic reticulum, plasma membrane | 42.08 | 47.12 |
| HORVU7Hr1G035230.2 | Barley | nucleus | 46.14 | 45.83 |
| GSMUA_Achr8P07310_001 | Banana | mitochondrion, nucleus | 43.71 | 44.49 |
| GSMUA_Achr10P... | Banana | nucleus | 42.35 | 43.78 |
| GSMUA_Achr1P18760_001 | Banana | nucleus | 44.65 | 43.65 |
| KRH11810 | Soybean | nucleus | 41.95 | 43.48 |
| KRH36827 | Soybean | nucleus | 41.68 | 43.44 |
| GSMUA_Achr11P... | Banana | nucleus | 42.08 | 41.8 |
| GSMUA_Achr5P10510_001 | Banana | nucleus | 44.52 | 41.38 |
| GSMUA_Achr11P... | Banana | plastid | 44.11 | 41.32 |
| GSMUA_Achr11P... | Banana | nucleus | 43.03 | 40.98 |
| GSMUA_Achr7P00210_001 | Banana | nucleus | 37.62 | 40.94 |
| Solyc09g057530.1.1 | Tomato | cytosol | 7.58 | 40.88 |
| GSMUA_Achr5P14100_001 | Banana | nucleus | 41.68 | 40.74 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.08 | 40.44 |
| GSMUA_Achr5P20050_001 | Banana | nucleus | 43.3 | 40.25 |
| AT3G03260.1 | Thale cress | nucleus | 37.89 | 40.06 |
| AT5G17320.1 | Thale cress | nucleus | 38.57 | 39.69 |
| KRH36826 | Soybean | nucleus | 37.89 | 39.27 |
| GSMUA_Achr4P19010_001 | Banana | nucleus | 42.49 | 39.2 |
| Bra023611.1-P | Field mustard | nucleus | 37.35 | 39.15 |
| CDX85461 | Canola | cytosol | 37.21 | 39.01 |
| Bra032003.1-P | Field mustard | nucleus | 36.27 | 38.9 |
| CDY62389 | Canola | cytosol | 25.71 | 38.85 |
| CDY43137 | Canola | nucleus | 36.13 | 38.75 |
| GSMUA_Achr3P12410_001 | Banana | nucleus | 38.84 | 38.68 |
| CDY67945 | Canola | nucleus | 35.99 | 38.61 |
| Bra020066.1-P | Field mustard | nucleus | 35.59 | 38.56 |
| CDY53691 | Canola | nucleus | 36.81 | 38.31 |
| CDY42301 | Canola | nucleus | 35.72 | 38.26 |
| Bra003213.1-P | Field mustard | nucleus | 36.67 | 38.17 |
| AT1G34650.1 | Thale cress | nucleus | 36.4 | 37.99 |
| Solyc09g066070.2.1 | Tomato | cytosol | 22.06 | 37.82 |
| PGSC0003DMT400051268 | Potato | cytosol | 25.44 | 37.68 |
| CDY44946 | Canola | nucleus | 32.88 | 37.5 |
| Solyc09g060140.2.1 | Tomato | mitochondrion | 18.67 | 37.5 |
| Bra008562.1-P | Field mustard | cytosol, nucleus, plastid | 36.67 | 37.48 |
| PGSC0003DMT400034503 | Potato | cytosol, nucleus | 34.24 | 37.15 |
| CDY49937 | Canola | nucleus | 34.78 | 37.03 |
| Solyc09g057540.2.1 | Tomato | cytosol | 24.9 | 37.02 |
| CDY02713 | Canola | nucleus | 36.94 | 36.94 |
| CDY21211 | Canola | nucleus | 34.37 | 36.6 |
| Solyc11g011940.1.1 | Tomato | nucleus | 35.45 | 36.54 |
| CDY16938 | Canola | nucleus | 32.48 | 36.36 |
| Bra021363.1-P | Field mustard | nucleus | 35.72 | 36.31 |
| GSMUA_Achr3P15400_001 | Banana | nucleus | 36.54 | 36.05 |
| Solyc09g066050.2.1 | Tomato | cytosol | 26.93 | 35.99 |
| PGSC0003DMT400085057 | Potato | cytosol | 23.14 | 35.77 |
| Solyc08g062510.2.1 | Tomato | nucleus | 31.39 | 35.53 |
| Solyc09g066030.1.1 | Tomato | nucleus | 34.64 | 35.41 |
| CDY69499 | Canola | cytosol | 14.48 | 35.2 |
| PGSC0003DMT400051266 | Potato | cytosol | 18.4 | 34.96 |
| KRH42428 | Soybean | nucleus | 35.72 | 34.87 |
| Solyc07g026570.1.1 | Tomato | nucleus | 6.63 | 34.75 |
| Solyc09g060130.1.1 | Tomato | cytosol | 20.84 | 34.68 |
| Solyc10g018030.1.1 | Tomato | cytosol | 19.35 | 34.62 |
| Solyc05g015030.1.1 | Tomato | cytosol | 22.19 | 34.6 |
| PGSC0003DMT400038820 | Potato | extracellular | 16.91 | 34.34 |
| Solyc09g060170.1.1 | Tomato | cytosol | 15.97 | 34.3 |
| Solyc11g022420.1.1 | Tomato | cytosol | 22.19 | 34.24 |
| GSMUA_Achr8P27340_001 | Banana | nucleus | 33.96 | 33.51 |
| Solyc08g062520.2.1 | Tomato | cytosol | 23.0 | 33.27 |
| Solyc07g026560.1.1 | Tomato | cytosol | 20.97 | 32.77 |
| Solyc10g018000.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 30.85 | 32.62 |
| Solyc10g018020.1.1 | Tomato | extracellular | 14.75 | 32.44 |
| Solyc04g025490.1.1 | Tomato | cytosol | 10.15 | 30.99 |
| KRH42429 | Soybean | cytosol | 30.58 | 30.96 |
| PGSC0003DMT400036411 | Potato | nucleus | 21.92 | 30.86 |
| Solyc04g025480.1.1 | Tomato | cytosol | 27.2 | 30.69 |
| Solyc07g037910.1.1 | Tomato | cytosol | 8.53 | 29.86 |
| TraesCSU01G150000.1 | Wheat | nucleus | 8.12 | 27.52 |
| Bra007562.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 9.61 | 24.83 |
| TraesCSU01G244000.1 | Wheat | nucleus | 6.77 | 24.27 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | Gene3D:3.30.530.20 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSMUA_Achr2G15140_001 | EnsemblPlants:GSMUA_Achr2P15140_001 | EnsemblPlants:GSMUA_Achr2T15140_001 | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 | InterPro:IPR023393 | UniProt:M0S855 |
| PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF490 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START-like_dom_sf |
| InterPro:START_lipid-bd_dom | UniParc:UPI000295AA7A | SEG:seg | : | : | : |
Description
Homeobox-leucine zipper protein ROC8 [Source:GMGC_GENE;Acc:GSMUA_Achr2G15140_001]
Coordinates
chr2:+:16568570..16574422
Molecular Weight (calculated)
82088.0 Da
IEP (calculated)
6.573
GRAVY (calculated)
-0.136
Length
739 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSGDEQDVP NSQSRKKRYH RHNPRQIQEL ESLFKVCLHP DEKQRLQLSR DLGLEPRQIK FWFQNRRTQM KATAALFSSF QRADNCLLRA ENDKIRCENI
101: AMREALKNVI CPSCGGPPPD DDSYFDEQKL RMDNTRLKEE LDRVSNLASK YLGRPLTQLP PVQPVSLSSL DLSAGGYGDA GISPSLDLDL LCRSSSSAFP
201: FQCPSTVSDL EKPLMVEMAT GAMEEVIRLV QTDEPLWVKS SDGRDILQLE TYDSMFQRLG RQLKFPGTRI EASRDSALVI MGAMTLIDMF MDASKWAELF
301: PTIVSKARTI EVLAAGMAGS RSGSLLLMYE EIQVLSPVVP MREFCFLRYC QQIEPGVWVV ADVSVDYPRD NRLALSSRSR RLPSGYLIEE MPNGYTKLTW
401: VEHMEIEDKN PIHILFRDLI NSGMLFGAQR WLAALQRMCE RFACLNVAGL PARDIGVAPS PDGKRSMMKL AQRMLSSFCA NVGASNGHQW NTISGLNDVG
501: VRVTIHKTTD AGRPDGIVLN AATSMWLPIS SEKVFGFFKD ERTRSQWDVL SNGNTLQEVA HITNGSHPGN CISLLRVCSF SLGLNSGQNT MLILQECCTD
601: AYGSVIVYSP VDLPAINIVM SGEDPSYIPI LPSGFTILPD GRAAAGASSS SNPMVGSSGS LLTVAFQILM SGLPSAKLNL ESVMTVNNLI GTTVQQIKSA
701: LNCTCINSCN FLKDLCSWLN GWFLHISWLH LFVQMLPKY
101: AMREALKNVI CPSCGGPPPD DDSYFDEQKL RMDNTRLKEE LDRVSNLASK YLGRPLTQLP PVQPVSLSSL DLSAGGYGDA GISPSLDLDL LCRSSSSAFP
201: FQCPSTVSDL EKPLMVEMAT GAMEEVIRLV QTDEPLWVKS SDGRDILQLE TYDSMFQRLG RQLKFPGTRI EASRDSALVI MGAMTLIDMF MDASKWAELF
301: PTIVSKARTI EVLAAGMAGS RSGSLLLMYE EIQVLSPVVP MREFCFLRYC QQIEPGVWVV ADVSVDYPRD NRLALSSRSR RLPSGYLIEE MPNGYTKLTW
401: VEHMEIEDKN PIHILFRDLI NSGMLFGAQR WLAALQRMCE RFACLNVAGL PARDIGVAPS PDGKRSMMKL AQRMLSSFCA NVGASNGHQW NTISGLNDVG
501: VRVTIHKTTD AGRPDGIVLN AATSMWLPIS SEKVFGFFKD ERTRSQWDVL SNGNTLQEVA HITNGSHPGN CISLLRVCSF SLGLNSGQNT MLILQECCTD
601: AYGSVIVYSP VDLPAINIVM SGEDPSYIPI LPSGFTILPD GRAAAGASSS SNPMVGSSGS LLTVAFQILM SGLPSAKLNL ESVMTVNNLI GTTVQQIKSA
701: LNCTCINSCN FLKDLCSWLN GWFLHISWLH LFVQMLPKY
001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
Arabidopsis Description
HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.