Factsheet for Bra003846.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra021035.1-P
Bra025431.1-P
Bra028174.1-P
Bra028181.1-P
Bra028406.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73360.1	Bra021035.1-P	AT4G17710.1	21798944
AT1G73360.1	Bra025431.1-P	AT5G38420.1	21798944
AT1G73360.1	Bra028174.1-P	AT5G38420.1	21798944
AT1G73360.1	Bra028181.1-P	AT5G38420.1	21798944
AT1G73360.1	Bra028406.1-P	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68229	Canola	nucleus	98.44	98.72
Bra015996.1-P	Field mustard	nucleus	90.35	88.84
AT1G73360.1	Thale cress	nucleus	85.67	83.66
Os06t0208100-00	Rice	nucleus	13.33	72.87
Bra016578.1-P	Field mustard	nucleus	67.09	69.15
Bra025938.1-P	Field mustard	nucleus	67.94	69.02
VIT_17s0053g00780.t01	Wine grape	nucleus	65.25	64.79
KRH09477	Soybean	nucleus	65.25	64.07
KRH38939	Soybean	nucleus	64.96	63.43
Solyc03g098200.2.1	Tomato	nucleus	62.55	61.16
PGSC0003DMT400069312	Potato	nucleus	61.28	60.42
Solyc06g072310.2.1	Tomato	nucleus	60.99	59.97
KRH60596	Soybean	nucleus	60.57	59.89
KRH41898	Soybean	nucleus	61.13	59.78
Bra000960.1-P	Field mustard	extracellular	9.5	57.27
GSMUA_Achr10P...	Banana	nucleus	55.74	55.27
Zm00001d018225_P001	Maize	nucleus	53.33	54.34
TraesCS6D01G304300.1	Wheat	nucleus	52.62	54.16
TraesCS6A01G324500.1	Wheat	nucleus	52.34	53.87
Zm00001d052133_P001	Maize	nucleus	53.33	53.87
EES05874	Sorghum	nucleus	53.48	53.32
GSMUA_Achr6P05990_001	Banana	nucleus	45.53	53.23
TraesCS6B01G354900.3	Wheat	nucleus	52.48	53.08
GSMUA_Achr2P15140_001	Banana	nucleus	55.6	53.04
Zm00001d044973_P001	Maize	nucleus	51.77	52.98
Zm00001d037140_P004	Maize	nucleus	51.35	52.69
GSMUA_Achr7P11310_001	Banana	nucleus	54.75	52.45
EER89393	Sorghum	nucleus	51.63	52.0
Os06t0207966-00	Rice	plastid	19.29	51.71
GSMUA_Achr10P...	Banana	nucleus	49.65	51.32
TraesCS7A01G167900.1	Wheat	nucleus	47.09	45.79
TraesCS7D01G168700.1	Wheat	nucleus	47.09	45.36
TraesCS7B01G072700.1	Wheat	nucleus	46.95	45.34
Bra015401.1-P	Field mustard	nucleus	46.1	45.14
Bra000807.1-P	Field mustard	nucleus	38.16	45.06
Bra032478.1-P	Field mustard	nucleus	45.67	44.78
Bra029527.1-P	Field mustard	nucleus	46.1	43.62
Bra020872.1-P	Field mustard	nucleus	46.1	43.45
Bra038757.1-P	Field mustard	nucleus	44.26	43.03
Bra013556.1-P	Field mustard	nucleus	40.43	41.3
Bra037355.1-P	Field mustard	nucleus	45.39	40.51
Bra028295.1-P	Field mustard	nucleus	39.01	40.32
Bra003439.1-P	Field mustard	nucleus	43.83	39.36
Bra004934.1-P	Field mustard	nucleus	43.55	39.06
Bra023611.1-P	Field mustard	nucleus	37.45	37.45
Bra021035.1-P	Field mustard	nucleus	38.87	37.33
Bra024984.1-P	Field mustard	nucleus	41.7	36.98
Bra005588.1-P	Field mustard	nucleus	36.6	36.65
Bra017519.1-P	Field mustard	nucleus	42.41	36.64
Bra021779.1-P	Field mustard	nucleus	36.88	35.71
Bra032003.1-P	Field mustard	nucleus	34.75	35.56
Bra020066.1-P	Field mustard	nucleus	34.33	35.48
Bra003213.1-P	Field mustard	nucleus	35.46	35.21
Bra008562.1-P	Field mustard	cytosol, nucleus, plastid	35.32	34.44
Bra003535.1-P	Field mustard	nucleus	36.31	34.13
Bra021363.1-P	Field mustard	nucleus	35.18	34.11
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	11.49	28.32
Bra013898.1-P	Field mustard	nucleus	24.68	27.93
TraesCSU01G150000.1	Wheat	nucleus	7.94	25.69
TraesCSU01G244000.1	Wheat	nucleus	6.67	22.82

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	Gene3D:3.30.530.20	EnsemblPlantsGene:Bra003846	EnsemblPlants:Bra003846.1	EnsemblPlants:Bra003846.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:M4CI13	PFAM:PF00046	PFAM:PF01852
PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF490	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI000254172D	SEG:seg

Description

AT1G73360 (E=1e-243) HDG11, EDT1, ATHDG11 | HDG11 (HOMEODOMAIN GLABROUS 11); DNA binding / transcription factor

Coordinates

chrA07:+:15340374..15343160

Molecular Weight (calculated)

77114.4 Da

IEP (calculated)

7.060

GRAVY (calculated)

-0.365

Length

705 amino acids

Sequence
(BLAST)

001: MSFVVGGSGS GGGDGGGGGG SSQRHDASES DRKKKRYHRH TAQQIQRLES SFRECPHPDD KQRNLLSKEL GLAPRQIKFW FQKRRTQRKA QHERADNSAL
101: KAENDKIRCE NIAIREAIKH AICPNCGGPP VSEDPYLDEQ KLRMENAHLR QELERMSTVA SKYMGRPISS HISTLHPMHI SPLDLSMTGP SLDFDLLPGS
201: SMSSNFAVSD MDKPIMNDIA LTAMDELLRL VHTNEPLWSR SDGRGEILNL GSYENVFPRS SNRGKNHNVR IEASRSSGIV FMNAMSLVDM FMDSAKWAEL
301: FPSIVAASKT LAVVSSGMGG GTHEGALHLM YEEMEVLSPL VATREFCELR YCQQIEQGSW IVVNVSYHLP QFVSHSHSYR FPSGCLIQDM PNGYSKVTWV
401: EHTETEEKEP VHELYREMVH KGIAFGAERW VTTLQRMCER FASLLAPAVS SLGGVIPSPE GKRSMMRLAH RMVSNYCISV SRSNNTRSTV VAELNDVGVR
501: VTAHKSPEPN GTILSAATTF WLPNSPQNVF NFLKDERTRP QWDVLSNSNA VQEVAHIANG SHPGCCISVL RASSASQSNN MLILQETSID SSGALVVYSP
601: VDLSALNIAM NGDDTSYIPL LSSGFAISPD GNRNSPSAEQ GGASSSSGYG GGGSLITVGF QIMVSNLPSA KLNMESVETV NNLIGTTVHQ IKTGLNNCPS
701: ASTTA

Best Arabidopsis Sequence Match ( AT1G73360.1 )
(BLAST)

001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA

Arabidopsis Description

HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.