Factsheet for Bra004934.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74762	Canola	nucleus	89.31	99.15
Os09t0526300-00	Rice	nucleus	14.25	85.5
Bra000960.1-P	Field mustard	extracellular	11.58	77.78
Bra003439.1-P	Field mustard	nucleus	68.45	68.53
VIT_15s0048g02000.t01	Wine grape	nucleus	67.3	65.23
KRH40539	Soybean	nucleus	67.18	64.39
KRH00641	Soybean	nucleus	66.92	63.99
Solyc01g091630.2.1	Tomato	nucleus	66.67	63.82
PGSC0003DMT400071377	Potato	nucleus	66.54	63.7
KRH48236	Soybean	nucleus	66.28	62.85
Bra037355.1-P	Field mustard	nucleus	62.98	62.66
KRH65144	Soybean	nucleus	66.41	62.44
GSMUA_Achr1P18760_001	Banana	nucleus	59.92	62.3
PGSC0003DMT400019986	Potato	nucleus	62.6	60.82
HORVU6Hr1G065300.3	Barley	nucleus	61.32	60.25
TraesCS6D01G237000.1	Wheat	nucleus	61.58	60.2
TraesCS6A01G255800.1	Wheat	nucleus	61.45	60.07
Os02t0674800-01	Rice	nucleus	61.32	59.95
TraesCS6B01G269700.1	Wheat	nucleus	61.32	59.95
Zm00001d040090_P002	Maize	nucleus	60.94	59.65
EES02604	Sorghum	nucleus	61.2	59.02
HORVU0Hr1G013510.1	Barley	cytosol	10.18	57.55
GSMUA_Achr3P12410_001	Banana	nucleus	54.2	57.41
Zm00001d040091_P001	Maize	nucleus	18.83	56.7
Os04t0569100-01	Rice	nucleus	56.74	55.34
HORVU5Hr1G080700.2	Barley	nucleus	58.4	53.81
TraesCS5B01G315100.2	Wheat	nucleus	58.02	53.65
TraesCS5D01G320600.1	Wheat	nucleus	57.89	53.59
TraesCS5A01G314400.2	Wheat	nucleus	57.76	53.47
EER99222	Sorghum	nucleus	58.91	53.1
KXG26935	Sorghum	nucleus	53.56	52.49
Bra028295.1-P	Field mustard	nucleus	44.4	51.17
Bra015401.1-P	Field mustard	nucleus	46.56	50.83
Zm00001d021236_P004	Maize	nucleus	58.14	50.61
Bra029527.1-P	Field mustard	nucleus	47.58	50.2
Bra000807.1-P	Field mustard	nucleus	38.04	50.08
Bra032478.1-P	Field mustard	nucleus	45.8	50.07
Bra038757.1-P	Field mustard	nucleus	46.18	50.07
TraesCS2D01G398600.1	Wheat	nucleus	48.85	48.98
HORVU2Hr1G095210.1	Barley	nucleus	48.47	48.85
TraesCS2B01G419200.1	Wheat	nucleus	48.47	48.53
Bra020872.1-P	Field mustard	nucleus	46.06	48.4
Zm00001d026088_P002	Maize	nucleus	51.15	48.2
TraesCS2A01G401200.3	Wheat	nucleus	48.47	47.62
Bra013556.1-P	Field mustard	nucleus	41.22	46.96
Bra016578.1-P	Field mustard	nucleus	38.42	44.15
Bra003846.1-P	Field mustard	nucleus	39.06	43.55
Bra015996.1-P	Field mustard	nucleus	38.93	42.68
HORVU4Hr1G062510.2	Barley	cytosol	14.89	42.24
Bra025938.1-P	Field mustard	nucleus	36.9	41.79
Bra005588.1-P	Field mustard	nucleus	37.4	41.76
Bra003535.1-P	Field mustard	nucleus	39.69	41.6
HORVU7Hr1G036950.2	Barley	cytosol	9.67	41.53
Bra021779.1-P	Field mustard	nucleus	37.53	40.52
HORVU3Hr1G108430.1	Barley	cytosol	15.01	35.44
Bra017519.1-P	Field mustard	nucleus	36.77	35.42
Bra024984.1-P	Field mustard	nucleus	35.37	34.97
Bra013898.1-P	Field mustard	nucleus	27.23	34.35
Bra021035.1-P	Field mustard	nucleus	31.81	34.06
Bra020066.1-P	Field mustard	nucleus	29.13	33.58
Bra032003.1-P	Field mustard	nucleus	29.26	33.38
Bra023611.1-P	Field mustard	nucleus	29.39	32.77
Bra003213.1-P	Field mustard	nucleus	29.26	32.39
Bra021363.1-P	Field mustard	nucleus	29.77	32.19
Bra008562.1-P	Field mustard	cytosol, nucleus, plastid	29.52	32.09
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	7.89	21.68

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	EnsemblPlantsGene:Bra004934	EnsemblPlants:Bra004934.1	EnsemblPlants:Bra004934.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	UniProt:M4CL48	PFAM:PF00046	PFAM:PF01852
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF487	SMART:SM00234
SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI0002547FF6	SEG:seg

Description

AT3G61150 (E=2e-283) HDG1, HD-GL2-1 | HDG1 (HOMEODOMAIN GLABROUS 1); DNA binding / transcription factor

Coordinates

chrA05:+:2556801..2560490

Molecular Weight (calculated)

86364.7 Da

IEP (calculated)

6.848

GRAVY (calculated)

-0.350

Length

786 amino acids

Sequence
(BLAST)

001: MNFSGFLHHD DDKTPGGETV GGGNHFFSPA TAMSGGPVQF SSPRLSLGLQ TNVENNGGEV GRTGESFEVS VTRRSPESRS GSDNVEALSG EDDLDASDRP
101: LKKKKRYHRH TPHQIQELES VFKECPHPDE KQRLDLSRRL NLDTRQVKFW FQNRRTQMKT QIERHENSLL RQENDKLRAE NMSVREAMRN PMCGHCGASA
201: VLGEISLEEH QLRIENSRLK DELDRLCALA GKFINRSDDA GSHQLPNSTL KLGVGSRNVD AGGGFTLLHP AFEISSSHFY SGLSAPVNRT GTDIASGGVD
301: EKSFYLELAV FAMDELVKMA QTSEPLWIQS SKGKREMLNR EEYDKSFRPC LGPKPGGFVS EASKEVGMVI INSLALVETL MDSERWAEMF PCMIAKNSTI
401: EIISSGMGGT RNGAIQLMQA ELQLLSPLVP VRQVTFLRFC KQHAEGVWAV VDVSVDRVSD RGGSASARSS LSCRRLPSGC LVHDMPNGYS KVTWIDHTEY
501: DETNIHHSYR PLVSSGLAFG SKRWVSALQR QCESLAILMS SAIPNRSKPT PAISSIGKKS MLRLAQRMTE NFCRGVCASS SQKWSKLDIG NIDEDVRIMT
601: RKNVNDSGEP PGILLSAATS VWVPVTPRRL FDFLRDELLR SEWDILSNGG PMQEIANIFK GQDHSNSVSL LRSTAMNASQ SSMLILQETS IDASGAVVVY
701: APVDIPAMHS VMNGGDSAYV ALLPSGFAIL PDGQGTEETG SLLTVAFQIL VNSLPTAKLN VESIETVSNL ISCTVQKIRA ALRCEK

Best Arabidopsis Sequence Match ( AT3G61150.1 )
(BLAST)

001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST

Arabidopsis Description

HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.