Factsheet for TraesCS2B01G419200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G398600.1	Wheat	nucleus	92.87	92.98
TraesCS2A01G401200.3	Wheat	nucleus	93.12	91.38
HORVU2Hr1G095210.1	Barley	nucleus	85.22	85.77
Os04t0569100-01	Rice	nucleus	59.87	58.31
TraesCS6B01G269700.1	Wheat	nucleus	57.58	56.22
KXG26935	Sorghum	nucleus	55.54	54.36
GSMUA_Achr1P18760_001	Banana	nucleus	51.08	53.04
Zm00001d026088_P002	Maize	nucleus	54.65	51.44
CDY18903	Canola	nucleus	46.11	51.35
VIT_15s0048g02000.t01	Wine grape	nucleus	52.99	51.29
CDX74762	Canola	nucleus	45.73	50.71
KRH40539	Soybean	nucleus	52.61	50.37
KRH00641	Soybean	nucleus	52.1	49.76
KRH48236	Soybean	nucleus	52.36	49.58
CDX67855	Canola	nucleus	49.04	49.36
KRH65144	Soybean	nucleus	52.48	49.28
PGSC0003DMT400071377	Potato	nucleus	51.47	49.21
Solyc01g091630.2.1	Tomato	nucleus	51.34	49.09
Bra003439.1-P	Field mustard	nucleus	48.92	48.92
CDY45684	Canola	nucleus	48.66	48.72
GSMUA_Achr3P12410_001	Banana	nucleus	45.86	48.52
Bra037355.1-P	Field mustard	nucleus	48.79	48.48
Bra004934.1-P	Field mustard	nucleus	48.53	48.47
CDY51143	Canola	nucleus	48.66	48.35
CDY07201	Canola	nucleus	48.41	48.22
PGSC0003DMT400019986	Potato	nucleus	49.17	47.71
CDX74347	Canola	nucleus	48.15	47.67
CDX91894	Canola	nucleus	48.03	47.48
AT3G61150.1	Thale cress	nucleus	48.79	47.4
AT4G00730.1	Thale cress	nucleus	48.03	47.01
TraesCS5B01G315100.2	Wheat	nucleus	48.03	44.35
TraesCS6B01G354900.3	Wheat	nucleus	37.83	42.61
TraesCS7B01G208600.1	Wheat	nucleus	43.31	42.61
TraesCS2B01G497500.1	Wheat	nucleus	40.89	41.42
TraesCS7B01G072700.1	Wheat	nucleus	33.63	36.16
TraesCS7B01G072800.1	Wheat	nucleus	6.62	35.37
TraesCS3B01G331200.1	Wheat	nucleus	32.23	33.51
TraesCS1B01G208400.1	Wheat	nucleus	33.89	29.89
TraesCS5B01G330300.1	Wheat	nucleus	28.15	29.43
TraesCS3B01G354900.1	Wheat	nucleus	24.71	28.4
TraesCS4B01G084700.16	Wheat	extracellular, golgi	28.79	27.87
TraesCS1B01G045500.1	Wheat	nucleus	7.52	27.06
TraesCS3B01G138400.1	Wheat	nucleus	7.26	26.51
TraesCS3B01G138600.1	Wheat	nucleus	7.13	26.05
TraesCS4B01G227900.1	Wheat	nucleus	7.26	25.56
TraesCS3B01G138800.1	Wheat	nucleus	5.99	24.87

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913
PFAM:PF00046	PFAM:PF01852	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF487
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	EnsemblPlantsGene:TraesCS2B01G419200
EnsemblPlants:TraesCS2B01G419200.1	TIGR:cd00086	TIGR:cd08875	SEG:seg	:	:

Description

No Description!

Coordinates

chr2B:+:600740018..600745678

Molecular Weight (calculated)

84375.0 Da

IEP (calculated)

6.217

GRAVY (calculated)

-0.171

Length

785 amino acids

Sequence
(BLAST)

001: MPREKGMAFW GFFDGNDGGP APDVNGFPYY SAAGPGALAS SSLSPPSCLA PAGAGRGGVK EENGSRSMTD HLHAVSGGDV GGGEDGEAAP ELGHHGKRKR
101: PSNARHTPRQ IQELQALFEQ CPHPDEKQRA ALGKRVRLQP SQVKFWFQNR RTQLKRESLL HENRQLMEEN GKLRAENLSL REAMTHPVCG GCGGPFPAML
201: DESPSLEEDL RVQNATLKNE LSRFCALASV FLGRSISFVA APPTPGSPVE RIGSVPATTA ANSTVTEFTG SPSSQTMGMA ITTMAKAGID RSVFLELATS
301: AMDELVKMAQ MDEPLWIPNV PLPGSLAKET LNHEVYSRTF SPSIGVKPPG FVSEASRESG IVSSDGSVEL VETLLDERRW SRFFSCIIAE SSIIEEISTG
401: AAGSRDGALL LMQAKLQVLS PLVPVREVAF LRFCKQLGEG LWAVVDVSID GLGMEQGLAV ASTTANMNCR RLPSGCVVQD TPNGFCKVTW VEHTVYHESS
501: VHQLYRPLLR SGLALGAGRW LATLQRQFDC LDVLMPKQDS SDAMLEGSRS LLRLAERMMD NFCAGVSASS AEWSKLDGFT GSIGEDVRIM ARRSVDEPGV
601: PAGVVLCAAT SVWMLVTPKR LFNFLCNERT RVEWDILSKG GPMQEVTKIY KGQQNGNAVS LLKATAPNTQ QDSSILILQE TCTDASSSTV VYSPVDIPAM
701: RRVMGGEGDP TSIMLLPSGF VILPGGPSMS GDDGHKTCGS LLTVAFQILG NRQPTGKLTV ESVQTVDSLI SCTINRIKTA LRCDA

Best Arabidopsis Sequence Match ( AT1G05230.8 )
(BLAST)

001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A

Arabidopsis Description

HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.